Escherichia coli 2018-01-1CC |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli 2018-01-1CC RM systems
Ref: Yamamoto,Y. et al. mSphere (2020) In press
REBASE ref # 30114
| Sequence length: | GenBank #: | |
| Chromosome: | 4,711,570 bp | AP021892 |
| Chromosome: | 4,711,570 bp | AP027869 |
REBASE acronym: Eco11CC
Org_num: 39272
All begin VEE71_, VEGS02_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20790 | restriction endonuclease | |||
| 20800 | R | Ecos671ORFCP (100% identity) | Eco11CCORF20810P | |
| 20810 | M | M.SflFF12ORF17265P (100% identity) | M.Eco11CCORF20810P | |
| 20820 | S | S1.Eco011CCORF20730P (100% identity) | S1.Eco11CCORF20810P | |
| 20830 | transposase | |||
| 20840 | repressor TnpA | |||
| 20850 | S | S2.Eco011CCORF20730P (100% identity) | S2.Eco11CCORF20810P | |
| 20860 | endoribonuclease SymE | |||
| 22800 | 621 aa hypothetical protein | |||
| 22810 | M | M.Eco011CCORF22720P (100% identity) | M.Eco11CCORF22810P | |
| 22820 | S | S.Eco011CCORF22720P (100% identity) | S.Eco11CCORF22810P | |
| 22830 | R | Eco011CCORF22720P (100% identity) | Eco11CCORF22810P | |
| 22840 | 388 aa hypothetical protein | |||
| 33580 | IS5 family transposase | |||
| 33590 | R | Eco011CCORF33460P (100% identity) | Eco11CCORF33610P | |
| 33600 | S | S1.Eco011CCORF33460P (100% identity) | S.Eco11CCORF33610P | |
| 33610 | M | M.Eco011CCORF33460P (100% identity) | M.Eco11CCORF33610P | |
| 33620 | 290 aa hypothetical protein | |||
| Chromosome | ||||
| 20710 | restriction endonuclease | |||
| 20720 | R | Ecos671ORFCP (100% identity) | Eco011CCORF20730P | |
| 20730 | M | M.SflFF12ORF17265P (100% identity) | M.Eco011CCORF20730P | |
| 20740 | S | S1.Eco11CCORF20810P (100% identity) | S1.Eco011CCORF20730P | |
| 20750 | transposase | |||
| 20760 | S | S2.Eco11CCORF20810P (100% identity) | S2.Eco011CCORF20730P | |
| 20770 | endoribonuclease SymE | |||
| 22710 | 621 aa hypothetical protein | |||
| 22720 | M | M.Eco11CCORF22810P (100% identity) | M.Eco011CCORF22720P | |
| 22730 | S | S.Eco11CCORF22810P (100% identity) | S.Eco011CCORF22720P | |
| 22740 | R | Eco11CCORF22810P (100% identity) | Eco011CCORF22720P | |
| 22750 | 388 aa hypothetical protein | |||
| 33430 | IS5 family transposase | |||
| ??? | S | S2.EcoLR641ORF28660P (100% identity) | S2.Eco011CCORF33460P | |
| 33440 | R | Eco11CCORF33610P (100% identity) | Eco011CCORF33460P | |
| 33450 | S | S.Eco11CCORF33610P (100% identity) | S1.Eco011CCORF33460P | |
| 33460 | M | M.Eco11CCORF33610P (100% identity) | M.Eco011CCORF33460P | |
| 33470 | 290 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1360 | phosphohydrolase | |||
| 1370 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco11CCDcmP |
| 1380 | V | V.SflFF64DcmP (100% identity) | V.Eco11CCDcmP | |
| 1390 | multidrug transporter | |||
| 13000 | protein ninX | |||
| 13010 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco11CCORF13010P |
| 13020 | protein ninB | |||
| 30170 | cell division protein DamX | |||
| 30180 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco11CCDamP |
| 30190 | ribulose-phosphate 3-epimerase | |||
| 31390 | acrEF/envCD operon repressor | |||
| 31400 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco11CCORF31400P |
| 31410 | DNA-binding protein Fis | |||
| 43610 | 252 aa hypothetical protein | |||
| 43620 | R | EcoYSP81ORFBP (100% identity) | RCSRC | Eco11CCORF43620P |
| 43630 | 81 aa hypothetical protein | |||
| Chromosome | ||||
| 12970 | protein ninX | |||
| 12980 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco011CCORF12980P |
| 12990 | protein ninB | |||
| 30040 | cell division protein DamX | |||
| 30050 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco011CCDamP |
| 30060 | ribulose-phosphate 3-epimerase | |||
| 31240 | acrEF/envCD operon repressor | |||
| 31250 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco011CCORF31250P |
| 31260 | DNA-binding protein Fis | |||
| 43430 | 252 aa hypothetical protein | |||
| 43440 | R | EcoYSP81ORFBP (100% identity) | RCSRC | Eco011CCORF43440P |
| 43450 | 79 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20780 | GTP-binding protein YjiA | |||
| 20790 | R | Ssp28760MrrP (100% identity) | Eco11CCMrrP | |
| 20800 | type I restriction-modification system | |||
| 20860 | endoribonuclease SymE | |||
| 20870 | R | Ssp28760McrBP (100% identity) | Eco11CCMcrBP | |
| 20880 | R | Ssp28760McrCP (100% identity) | Eco11CCMcrCP | |
| Chromosome | ||||
| 20700 | GTP-binding protein YjiA | |||
| 20710 | R | Ssp28760MrrP (100% identity) | Eco011CCMrrP | |
| 20720 | type I restriction-modification system | |||
| 20770 | endoribonuclease SymE | |||
| 20780 | R | Ssp28760McrBP (100% identity) | Eco011CCMcrBP | |
| 20790 | R | Ssp28760McrCP (100% identity) | Eco011CCMcrCP | |
| 43290 | 57 aa hypothetical protein | |||
| 43300 | R | EcoPI12ORF8315P (100% identity) | Eco011CCORF43300P | |
| 43310 | 108 aa hypothetical protein | |||