Escherichia coli LD26-1 |
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Putative Escherichia coli LD26-1 RM systems
Ref: Li,R. and Wang,Z. unpublished
REBASE ref # 29320
| Sequence length: | GenBank #: | |
| Chromosome: | 4,774,827 bp | CP047665 |
| plasmid pLD26-1-MCR1: | 251,000 bp | CP047666 |
REBASE acronym: EcoLD261
Org_num: 38080
All begin GUU86_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18105 | tyrosine-type recombinase/integrase | |||
| 18110 | R | SflFF22ORF2075P (100% identity) | GACNNNNNNRTAAY | EcoLD261ORF18120P |
| 18115 | S | S.SsoSE61ORF6540P (100% identity) | GACNNNNNNRTAAY | S.EcoLD261ORF18120P |
| 18120 | M | M.SsoSE61ORF6540P (100% identity) | GACNNNNNNRTAAY | M.EcoLD261ORF18120P |
| 18125 | DUF4942 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 450 | TraR/DksA family transcriptional regulator | |||
| 455 | M | M.Eco221ORF14640P (100% identity) | GATC | M.EcoLD261ORF455P |
| 460 | replication endonuclease | |||
| 6135 | drug/metabolite exporter YedA | |||
| 6140 | V | V.SflFF64DcmP (100% identity) | V.EcoLD261DcmP | |
| 6145 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoLD261DcmP |
| 6150 | phosphohydrolase | |||
| 12835 | DNA-binding transcriptional regulator Fis | |||
| 12840 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoLD261ORF12840P |
| 12845 | DUF2556 domain-containing protein | |||
| 13390 | ribulose-phosphate 3-epimerase | |||
| 13395 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoLD261DamP |
| 13400 | cell division protein DamX | |||
| 20025 | PerC family transcriptional regulator | |||
| 20030 | M | M.EcoSC101ORFHP (100% identity) | GATC | M.EcoLD261ORF20030P |
| 20035 | LexA family transcriptional regulator | |||
| 20225 | 257 aa hypothetical protein | |||
| ??? | M | M.Eco221ORF17750P (100% identity) | M.EcoLD261ORF20230P | |
| 20235 | R | Sso8033ORF3755P (100% identity) | EcoLD261ORF20230P | |
| 20240 | 136 aa hypothetical protein | |||
| 22700 | recombination protein NinB | |||
| 22705 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoLD261ORF22705P |
| 22710 | NinE family protein | |||
| plasmid pLD26-1-MCR1 | ||||
| 23440 | DUF1173 family protein | |||
| 23445 | M | M.YpsF1ORFCP (100% identity) | M.EcoLD261ORF23445P | |
| 23450 | nuclease | |||
| 24055 | 108 aa hypothetical protein | |||
| 24060 | M | M.YpsF1ORFBP (100% identity) | M.EcoLD261ORF24060P | |
| 24065 | 202 aa hypothetical protein | |||
| 24170 | DNA-binding protein | |||
| 24175 | M | M.YpsF1ORFDP (100% identity) | M.EcoLD261ORF24175P | |
| 24180 | 284 aa hypothetical protein | |||