Escherichia coli NCCP 15955 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli NCCP 15955 RM systems
Ref: Yu,W.S. et al. unpublished
REBASE ref # 29692
Complete sequence: 4,820,620 bp
GenBank #: CP041749
REBASE acronym: Ecos15955
Org_num: 37698
All begin FOV95_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 12090 | endoribonuclease SymE | |||
| 12095 | S | S.EcoZYB62ORF19905P (100% identity) | S.Ecos15955ORF12100P | |
| 12100 | M | M.EcoZYB62ORF19905P (100% identity) | M.Ecos15955ORF12100P | |
| ??? | R | EcoZYB62ORF19905P (100% identity) | Ecos15955ORF12100P | |
| 12110 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 230 | NinE family protein | |||
| 235 | M | M.Eco10410ORF9370P (100% identity) | GATC | M.Ecos15955ORF235P |
| 240 | recombination protein NinB | |||
| 5625 | DNA-binding transcriptional regulator Fis | |||
| 5630 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Ecos15955ORF5630P |
| 5635 | DUF2556 domain-containing protein | |||
| 6260 | ribulose-phosphate 3-epimerase | |||
| 6265 | M | M.UbaC1152DamP (100% identity) | GATC | M.Ecos15955DamP |
| 6270 | cell division protein DamX | |||
| 7695 | transposase | |||
| 7700 | R | SflFF80ORF21000P (100% identity) | YGGCCR | Ecos15955ORF7705P |
| 7705 | M | M.SflFF80ORF21000P (100% identity) | YGGCCR | M.Ecos15955ORF7705P |
| 7710 | integrase | |||
| 18270 | phosphohydrolase | |||
| 18275 | M | M.SspS13DcmP (99% identity) | CCWGG | M.Ecos15955DcmP |
| 18280 | V | V.SsoSE61DcmP (100% identity) | V.Ecos15955DcmP | |
| 18285 | drug/metabolite exporter YedA | |||
| 19275 | TrmB family transcriptional regulator | |||
| 19280 | M | M.EcoAug61ORFAP (98% identity) | M.Ecos15955ORF19280P | |
| 19300 | DUF1737 domain-containing protein | |||
| 20855 | NinE family protein | |||
| 20860 | M | M.EcoSTEC639ORF4125P (100% identity) | M.Ecos15955ORF20860P | |
| 20865 | protein ninF | |||
| 21255 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Ecos15955ORF21260P | |
| 21265 | 59 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12105 | type I restriction-modification system | |||
| 12110 | R | Ssp28760MrrP (100% identity) | Ecos15955MrrP | |
| 12115 | GTPase | |||
| 19635 | tail fiber assembly protein | |||
| 19640 | R | EcoVL01McrBP (100% identity) | Ecos15955McrBP | |
| 19645 | R | EcoVL01McrCP (100% identity) | Ecos15955McrCP | |
| 19650 | isocitrate dehydrogenase | |||