Escherichia coli 1896 |
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Putative Escherichia coli 1896 RM systems
Ref: Naithani,A. et al. unpublished
REBASE ref # 29687
| Sequence length: | GenBank #: | |
| Chromosome: | 4,936,652 bp | CP026939 |
| plasmid p1896-2: | 111,822 bp | CP026941 |
REBASE acronym: Eco1896
Org_num: 37685
All begin C5F74_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21820 | adenine/cytosine-specific restriction | |||
| 21825 | R | Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | Eco1896ORF21830P |
| 21830 | M | M.Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | M.Eco1896ORF21830P |
| ??? | S | S.EcoU90ORF3805P (100% identity) | TGANNNNNNNNTGCT | S.Eco1896ORF21830P |
| 21840 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2155 | cell division protein DamX | |||
| 2160 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco1896DamP |
| 2165 | ribulose-phosphate 3-epimerase | |||
| 2745 | DUF2556 family protein | |||
| 2750 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco1896ORF2750P |
| 2755 | DNA-binding transcriptional regulator Fis | |||
| 8805 | 67 aa hypothetical protein | |||
| 8810 | M | M.SflSTLE1ORF5465P (100% identity) | M.Eco1896ORF8810P | |
| 8815 | phage holin, lambda family | |||
| 10425 | HD domain-containing protein | |||
| 10430 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.Eco1896DcmP |
| 10435 | V | V.SflSTLE3DcmP (100% identity) | V.Eco1896DcmP | |
| 10440 | drug/metabolite exporter YedA | |||
| 16615 | replication endonuclease | |||
| 16620 | M | M.EcoI008ORF14830P (100% identity) | M.Eco1896ORF16620P | |
| 16625 | TraR/DksA family transcriptional regulator | |||
| plasmid p1896-2 | ||||
| 26765 | 103 aa hypothetical protein | |||
| 26770 | M | M.StyR64ORFAP (100% identity) | M.Eco1896ORF26770P | |
| 26775 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21815 | GTPase | |||
| 21820 | R | Ssp28760MrrP (100% identity) | Eco1896MrrP | |
| 21825 | type I restriction-modification system | |||
| 21840 | endoribonuclease SymE | |||
| 21845 | R | Ssp28760McrBP (100% identity) | Eco1896McrBP | |
| 21850 | R | Ssp28760McrCP (100% identity) | Eco1896McrCP | |