Escherichia coli K-12 |
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Putative Escherichia coli K-12 RM systems
Ref: Zhang,L. and Jiang,H. unpublished
REBASE ref # 29316
| Sequence length: | GenBank #: | |
| Chromosome: | 4,582,546 bp | CP047127 |
| plasmid pT-HNK130-3: | 85,943 bp | CP047128 |
REBASE acronym: EcoK12C
Org_num: 36739
All begin GRF62_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5635 | Mrr restriction system protein | |||
| ??? | R | Esp17TGCORF18925P (100% identity) | AACNNNNNNGTGC | EcoK12CORF5645P |
| 5645 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoK12CORF5645P |
| 5650 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoK12CORF5645P |
| 5655 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10550 | cell division protein DamX | |||
| 10555 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoK12CDamP |
| 10560 | ribulose-phosphate 3-epimerase | |||
| 11175 | DUF2556 domain-containing protein | |||
| 11180 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoK12CORF11180P |
| 11185 | DNA-binding transcriptional regulator Fis | |||
| 17635 | phosphohydrolase | |||
| 17640 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoK12CDcmP |
| 17645 | V | V.SflFF64DcmP (100% identity) | V.EcoK12CDcmP | |
| 17650 | drug/metabolite exporter YedA | |||
| 21585 | DUF1317 family protein | |||
| ??? | M | M.EcoNEB10bORF6575P (100% identity) | M.EcoK12CORF21590P | |
| 21595 | DUF4060 family protein | |||
| plasmid pT-HNK130-3 | ||||
| 22150 | 100 aa hypothetical protein | |||
| 22155 | M | M.SenHNK130ORF185P (100% identity) | M.EcoK12CORF22155P | |
| 22160 | 158 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 30 | isocitrate dehydrogenase | |||
| 35 | R | SsoSE61ORF22640P (100% identity) | YCGR | EcoK12CORF35P |
| 40 | site-specific DNA recombinase | |||
| 5630 | GTPase | |||
| 5635 | R | SenHNK130MrrP (100% identity) | EcoK12CMrrP | |
| 5640 | type I restriction-modification system | |||
| 5655 | endoribonuclease SymE | |||
| 5660 | R | SenHNK130McrBP (100% identity) | EcoK12CMcrBP | |
| 5665 | R | SenHNK130McrCP (100% identity) | EcoK12CMcrCP | |
| 5670 | 906 aa hypothetical protein | |||