Clostridioides difficile 21025 |
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Putative Clostridioides difficile 21025 RM systems
Ref: Oliveira,P.H. et al. unpublished
REBASE ref # 29046
Contig set: 4,221,541 bp
GenBank #: PZOO00000000 (NZ_PZOO00000000)
REBASE acronym: Cdi21025
Org_num: 35933
All begin DA402_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5815 | ketose-bisphosphate aldolase | |||
| 5820 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.Cdi21025II |
| 5825 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.Cdi21025II |
| 5830 | 102 aa hypothetical protein | |||
| 5835 | nucleotidyltransferase domain-containing | |||
| 5840 | 142 aa hypothetical protein | |||
| 5845 | R | CdiCd24ORF1400P (100% identity) | CANNNNNNNTAAAG | Cdi21025IIP |
| 5850 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5400 | 90 aa hypothetical protein | |||
| 5405 | R | CdiST42DptFP (100% identity) | Cdi21025DptFP | |
| 5410 | DNA phosphorothioation-dependent restriction | |||
| 5405 | DNA phosphorothioation-dependent restriction | |||
| 5410 | R | CdiST42DptGP (100% identity) | Cdi21025DptGP | |
| 5415 | DNA phosphorothioation-dependent restriction | |||
| 5410 | DNA phosphorothioation-dependent restriction | |||
| 5415 | R | CdiST42DptHP (77% identity) | Cdi21025DptHP | |
| 5420 | DUF87 domain-containing protein | |||
| 5415 | DNA phosphorothioation-dependent restriction | |||
| 5420 | R | CdiST42DptHP (22% identity) | Cdi21025DptH2P | |
| 5425 | DUF1832 domain-containing protein | |||
| 5420 | DUF87 domain-containing protein | |||
| 5425 | M | M.CdiCd24DndEP (100% identity) | M.Cdi21025DndEP | |
| 5430 | DNA sulfur modification protein DndD | |||
| 5425 | DUF1832 domain-containing protein | |||
| 5430 | M | M.CdiST42DndDP (100% identity) | M.Cdi21025DndDP | |
| 5435 | DNA phosphorothioation system sulfurtransferase | |||
| 5430 | DNA sulfur modification protein DndD | |||
| 5435 | M | M.CdiST42DndCP (100% identity) | M.Cdi21025DndCP | |
| 5440 | LytTR family transcriptional regulator | |||
| 7180 | Rrf2 family transcriptional regulator | |||
| 7185 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi21025I |
| 7190 | patatin-like phospholipase family protein | |||
| 19620 | 224 aa hypothetical protein | |||
| 19625 | RM | Cdo002IV (99% identity) | GCMGAAG | Cdi21025III |
| 19630 | XRE family transcriptional regulator | |||
| 19625 | N-6 DNA methylase | |||
| 19630 | C | C.PdiZ31ORF415P (100% identity) | C.Cdi21025ORF19630P | |
| 19635 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11205 | cell division protein | |||
| 11210 | R | Pdi6602McrBP (100% identity) | Cdi21025McrBP | |
| 11215 | R | Cdo002McrCP (100% identity) | Cdi21025McrCP | |
| 11220 | AAA family ATPase | |||