Salmonella enterica subsp. enterica SCSM4.1 |
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Putative Salmonella enterica subsp. enterica SCSM4.1 RM systems
Ref: He,J. et al. unpublished
REBASE ref # 29151
| Sequence length: | GenBank #: | |
| Chromosome: | 5,013,113 bp | CP047115 |
| plasmid plas4.1.1: | 190,174 bp | CP047116 |
REBASE acronym: SenM41
Org_num: 36181
All begin GO502_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20400 | restriction endonuclease | |||
| 20405 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenM41ORF20410P |
| 20410 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.SenM41ORF20410P |
| 20415 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenM41ORF20410P |
| 20420 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1825 | cell division protein DamX | |||
| 1830 | M | M.StyTDamP (100% identity) | GATC | M.SenM41DamP |
| 1835 | ribulose-phosphate 3-epimerase | |||
| 2325 | DUF2556 domain-containing protein | |||
| 2330 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenM41ORF2330P |
| 2335 | DNA-binding transcriptional regulator Fis | |||
| 6110 | ead/Ea22-like family protein | |||
| 6115 | M | M.StyTORF1914P (100% identity) | M.SenM41ORF6115P | |
| 6120 | 92 aa hypothetical protein | |||
| 9435 | PerC family transcriptional regulator | |||
| ??? | M | M.SenceORFKP (100% identity) | M.SenM41ORF9440P | |
| 9445 | RusA family crossover junction | |||
| 9685 | phosphohydrolase | |||
| 9690 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenM41DcmP |
| 9695 | V | V.StyUK1DcmP (100% identity) | V.SenM41DcmP | |
| 9700 | drug/metabolite exporter YedA | |||
| 20560 | BREX system P-loop protein BrxC | |||
| 20565 | RM | StyUK1IV (100% identity) | GATCAG | SenM41ORF20565P |
| 20570 | AAA family ATPase | |||
| plasmid plas4.1.1 | ||||
| 25030 | DUF1173 family protein | |||
| 25035 | M | M.YpsF1ORFCP (100% identity) | M.SenM41ORF25035P | |
| 25040 | nuclease | |||
| 25475 | DNA-binding protein | |||
| 25480 | M | M.YpsF1ORFDP (100% identity) | M.SenM41ORF25480P | |
| 25485 | 284 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18095 | 33 aa hypothetical protein | |||
| 18100 | R | StyUK1IP (99% identity) | CAGAG | SenM41ORF18105P |
| 18105 | M | M.StyUK1I (100% identity) | CAGAG | M.SenM41ORF18105P |
| 18110 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20395 | BrnT family toxin | |||
| 20400 | R | StyUK1MrrP (100% identity) | SenM41MrrP | |
| 20405 | type I restriction-modification system | |||