Lactobacillus johnsonii DC22.2 |
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Putative Lactobacillus johnsonii DC22.2 RM systems
Ref: Richards,P.J. et al. unpublished
REBASE ref # 29761
Complete sequence: 1,904,421 bp
GenBank #: CP039261
REBASE acronym: LjoDC222
Org_num: 38151
All begin E6A54_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4770 | 149 aa hypothetical protein | |||
| 4775 | R | LheMB21ORF5825P (98% identity) | LjoDC222ORF4795P | |
| 4780 | S | S2.LsaS99ORF7440P (34% identity) | S2.LjoDC222ORF4795P | |
| 4785 | site-specific integrase | |||
| 4790 | S | S1.Ljo9203ORF1060P (48% identity) | S1.LjoDC222ORF4795P | |
| 4795 | M | M.LheDORF1154P (97% identity) | M.LjoDC222ORF4795P | |
| 4800 | 280 aa hypothetical protein | |||
| 5160 | 966 aa hypothetical protein | |||
| 5165 | S | S.Ljo22ORF7670P (99% identity) | S.LjoDC222ORF5170P | |
| 5170 | M | M.Ljo22ORF7670P (99% identity) | M.LjoDC222ORF5170P | |
| 5175 | RloB domain-containing protein | |||
| 5180 | ATP-binding protein | |||
| 5185 | R | Ljo22ORF7670P (99% identity) | LjoDC222ORF5170P | |
| 5190 | tetratricopeptide repeat protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1375 | IS30-like element ISLjo1 family transposase | |||
| 1380 | RM | LheDORF260P (85% identity) | LjoDC222ORF1380P | |
| 1385 | 87 aa hypothetical protein | |||
| 7350 | DUF262 domain-containing protein | |||
| 7355 | RM | Ljo21ORF2715P (96% identity) | LjoDC222ORF7355P | |
| 7360 | M | LfeHFB3ORF3190AP (77% identity) | M.LjoDC222ORF7355P | |
| 7365 | methylase | |||
| 7360 | restriction endonuclease | |||
| 7365 | M | M1.Ljo21ORF2715P (89% identity) | M.LjoDC222ORF7365P | |
| 7370 | C | C.LplYC41ORFAP (95% identity) | C.LjoDC222ORF7365P | |
| 7375 | 144 aa hypothetical protein | |||
| 9160 | 76 aa hypothetical protein | |||
| 9165 | M | M.LsaL28ORF9310P (66% identity) | M.LjoDC222ORF9165P | |
| 9170 | recombinase family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 315 | exodeoxyribonuclease III | |||
| 320 | R | Ljo22ORF2780P (99% identity) | LjoDC222ORF320P | |
| 325 | alpha/beta hydrolase | |||
| 5140 | prenyltransferase | |||
| 5145 | R | Ljo33200ORF1222P (99% identity) | LjoDC222ORF5145P | |
| 5150 | (deoxy)nucleoside triphosphate | |||