Escherichia coli PT109 |
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Putative Escherichia coli PT109 RM systems
Ref: Brilhante,M. et al. unpublished
REBASE ref # 29332
| Sequence length: | GenBank #: | |
| Chromosome: | 4,816,454 bp | CP041031 |
| plasmid pLB_CTX-M-15_PT109: | 126,409 bp | CP041032 |
REBASE acronym: EcoPT109
Org_num: 36798
All begin FIR93_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5700 | IS1 family transposase | |||
| 5705 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoPT109ORF5715P |
| 5710 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoPT109ORF5715P |
| 5715 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoPT109ORF5715P |
| 5720 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1930 | cell division protein DamX | |||
| 1935 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoPT109DamP |
| 1940 | ribulose-phosphate 3-epimerase | |||
| 2555 | DUF2556 domain-containing protein | |||
| 2560 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoPT109ORF2560P |
| 2565 | DNA-binding transcriptional regulator Fis | |||
| 9345 | phosphohydrolase | |||
| 9350 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoPT109DcmP |
| 9355 | V | V.SflFF64DcmP (100% identity) | V.EcoPT109DcmP | |
| 9360 | drug/metabolite exporter YedA | |||
| 19570 | phage lysis protein EssD | |||
| 19575 | M | M.Sso63633ORF22290P (100% identity) | M.EcoPT109ORF19575P | |
| 19580 | 67 aa hypothetical protein | |||
| 19605 | LexA family transcriptional regulator | |||
| 19610 | M | M.Sso30ORF925P (100% identity) | GATC | M.EcoPT109ORF19610P |
| 19615 | PerC family transcriptional regulator | |||
| plasmid pLB_CTX-M-15_PT109 | ||||
| 23770 | 73 aa hypothetical protein | |||
| 23775 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoPT109ORF23775P | |
| 23780 | 102 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13410 | isocitrate dehydrogenase | |||
| 13415 | R | EcosEC27McrCP (100% identity) | EcoPT109McrCP | |
| 13420 | R | EcoteDMcrBP (100% identity) | EcoPT109McrBP | |
| 13425 | helix-turn-helix domain-containing protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14965 | replication endonuclease | |||
| 14970 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcoPT109ORF14970P |
| 14975 | TraR/DksA family transcriptional regulator | |||