Escherichia coli O22:H8 RM10809-3 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli O22:H8 RM10809-3 RM systems
Ref: Carter,M.Q. and Pham,A.C. unpublished
REBASE ref # 29329
| Sequence length: | GenBank #: | |
| Chromosome: | 5,128,479 bp | CP023165 |
| plasmid pRM10809-3: | 122,641 bp | CP023164 |
REBASE acronym: Eco108093
Org_num: 36789
All begin CLC88_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 25585 | 428 aa hypothetical protein | |||
| 25590 | S | S.SflN101ORF11895P (100% identity) | TGANNNNNNTCCA | S.Eco108093ORF25595P |
| 25595 | M | M.SflN101ORF11895P (100% identity) | TGANNNNNNTCCA | M.Eco108093ORF25595P |
| 25600 | 128 aa hypothetical protein | |||
| 25815 | endoribonuclease SymE | |||
| 25825 | S | S1.EcoC711ORF19825P (100% identity) | S.Eco108093ORF25830P | |
| 25830 | M | M.SspS13ORF3945P (100% identity) | M.Eco108093ORF25830P | |
| 25835 | R | SflN101ORF11675P (100% identity) | Eco108093ORF25830P | |
| 25840 | 322 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5545 | TraR/DksA family transcriptional regulator | |||
| 5550 | M | M.SspS13ORF8710P (100% identity) | GATC | M.Eco108093ORF5550P |
| 5555 | replication endonuclease | |||
| 7330 | TrmB family transcriptional regulator | |||
| 7335 | M | M.EcoDEC11CORF5871P (99% identity) | M.Eco108093ORF7335P | |
| 7355 | Shiga toxin Stx2 subunit A | |||
| 8715 | TrmB family transcriptional regulator | |||
| 8720 | M | M.Ecos154ORF3040P (100% identity) | M.Eco108093ORF8720P | |
| 8735 | cell envelope integrity protein TolA | |||
| 12725 | drug/metabolite exporter YedA | |||
| 12730 | V | V.SflFF64DcmP (100% identity) | V.Eco108093DcmP | |
| 12735 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco108093DcmP |
| 12740 | phosphohydrolase | |||
| 13845 | LexA family transcriptional regulator | |||
| 13850 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.Eco108093ORF13850P |
| 13855 | PerC family transcriptional regulator | |||
| 20315 | DNA-binding transcriptional regulator Fis | |||
| 20320 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco108093ORF20320P |
| 20325 | DUF2556 domain-containing protein | |||
| 20855 | ribulose-phosphate 3-epimerase | |||
| 20860 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco108093DamP |
| 20865 | cell division protein DamX | |||
| 25610 | restriction endonuclease | |||
| 25615 | R | SflN101ORF11875P (100% identity) | Eco108093ORF25615P | |
| 25620 | HNH endonuclease | |||
| plasmid pRM10809-3 | ||||
| 600 | DUF1380 domain-containing protein | |||
| 605 | M | M.Eco53629ORFFP (87% identity) | M.Eco108093ORF605P | |
| 610 | group II intron reverse transcriptase/maturase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 25600 | 128 aa hypothetical protein | |||
| 25605 | R | SflN101McrCP (100% identity) | Eco108093McrCP | |
| 25610 | R | SflN101McrBP (100% identity) | Eco108093McrBP | |
| 25615 | HNH endonuclease | |||