Glaesserella parasuis SCW0912 |
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Putative Glaesserella parasuis SCW0912 RM systems
Ref: Zhang,P. and Wang,Y. unpublished
REBASE ref # 29049
Complete sequence: 2,349,014 bp
GenBank #: CP046114
REBASE acronym: Gpa912
Org_num: 35742
All begin GJV39_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 85 | 16S rRNA (guanine(527)-N(7))-methyltransferase | |||
| 90 | M | M.HpaNagORF1654P (100% identity) | GTANNNNNNNCTTG | M.Gpa912II |
| 95 | 163 aa hypothetical protein | |||
| 100 | ATP-binding protein | |||
| 105 | R | HpaNagORF1654P (100% identity) | GTANNNNNNNCTTG | Gpa912IIP |
| 110 | S | S.HpaNNII (100% identity) | GTANNNNNNNCTTG | S.Gpa912II |
| 115 | tRNA uridine-5-carboxymethylaminomethyl(34) | |||
| 1100 | 71 aa hypothetical protein | |||
| 1105 | R | HpaNagORF1802P (100% identity) | Gpa912ORF1135P | |
| 1110 | 145 aa hypothetical protein | |||
| 1115 | DUF1829 domain-containing protein | |||
| 1120 | S | S2.HpaNagORF1802P (100% identity) | S3.Gpa912ORF1135P | |
| 1125 | S | S.HpaSH03ORF10045P (48% identity) | S2.Gpa912ORF1135P | |
| 1130 | AAA family ATPase | |||
| 1135 | M | M.HpaNagORF1802P (100% identity) | M.Gpa912ORF1135P | |
| 1140 | 137 aa hypothetical protein | |||
| 4260 | apolipoprotein N-acyltransferase | |||
| 4265 | R | HpaNagORF693P (100% identity) | AAGNNNNNNTCC | Gpa912IIIP |
| 4270 | AAA family ATPase | |||
| 4275 | S | S.Hpa1401ORF9595P (62% identity) | AAGNNNNNNTCC | S.Gpa912III |
| 4280 | M | M.HpaNagORF693P (100% identity) | AAGNNNNNNTCC | M.Gpa912III |
| 4285 | RNA polymerase sigma factor RpoE | |||
| 6530 | histidinol-phosphate transaminase | |||
| 6535 | R | HpaNagORF319P (100% identity) | Gpa912ORF6545P | |
| 6540 | S | S.HpaNNORF6450P (100% identity) | S.Gpa912ORF6545P | |
| 6545 | M | M.HpaNNORF6450P (100% identity) | M.Gpa912ORF6545P | |
| 6550 | 3-phosphoserine/phosphohydroxythreonine | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 865 | cell filamentation protein Fic | |||
| 870 | S | S1.HpaNNORF865P (100% identity) | S2.Gpa912ORF880P | |
| 875 | S | S2.HpaNNORF865P (100% identity) | S1.Gpa912ORF880P | |
| 880 | RM | HpaNagORF1545P (100% identity) | Gpa912ORF880P | |
| 885 | DUF4143 domain-containing protein | |||
| 3395 | aspartate-semialdehyde dehydrogenase | |||
| 3400 | M | HpaNagORF863P (100% identity) | M.Gpa912ORF3400P | |
| 3405 | 141 aa hypothetical protein | |||
| 3900 | peptide chain release factor 1 | |||
| 3905 | M | M.HpaSH03ORF2165P (98% identity) | GCGC | M.Gpa912ORF3905P |
| 3910 | R | HpaNagORF782P (100% identity) | Gpa912ORF3905P | |
| 3915 | peptide chain release factor N(5)-glutamine | |||
| 6980 | 199 aa hypothetical protein | |||
| 6985 | M | M.GpaHPS1ORF5345P (100% identity) | M.Gpa912ORF6985P | |
| 6990 | chromosome partition protein MukE | |||
| 8365 | 3-dehydroquinate synthase | |||
| 8370 | M | M.HpaST41ORF8035P (100% identity) | GATC | M.Gpa912I |
| 8375 | sodium-dependent transporter | |||
| 9175 | flavodoxin-dependent | |||
| 9180 | M | M.HpaST41ORF8905P (100% identity) | M.Gpa912ORF9180P | |
| 9185 | R | HpaST41ORF8905P (100% identity) | Gpa912ORF9180P | |
| 9190 | 2-hydroxyacid dehydrogenase | |||
| 10120 | 134 aa hypothetical protein | |||
| 10125 | M | M1.HpaSH03ORF7930P (100% identity) | M1.Gpa912ORF10125P | |
| 10130 | M | M2.HpaSH03ORF7930P (100% identity) | M2.Gpa912ORF10125P | |
| 10135 | RM | HpaSH03ORF7930P (100% identity) | Gpa912ORF10125P | |
| 10140 | DUF4411 family protein | |||
| 10295 | 86 aa hypothetical protein | |||
| 10300 | M | M.HpaNagORF1948P (100% identity) | M.Gpa912ORF10300P | |
| 10305 | enoyl-CoA hydratase | |||
| 10670 | 86 aa hypothetical protein | |||
| 10675 | M | M.HpaNNORF10520P (82% identity) | M.Gpa912ORF10675P | |
| 10680 | enoyl-CoA hydratase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1405 | ketol-acid reductoisomerase | |||
| ??? | M | M.GpaHF57ORF830P (99% identity) | M.Gpa912ORF1410P | |
| 1420 | R | HpaNagORF1223P (100% identity) | Gpa912ORF1410P | |
| 1425 | Fic family protein | |||
| 11155 | 49 aa hypothetical protein | |||
| 11160 | M | M.HpaST41ORF1100P (100% identity) | M.Gpa912ORF11160P | |
| 11165 | R | HpaST41ORF1100P (100% identity) | Gpa912ORF11160P | |
| 11170 | IS1595 family transposase | |||