Gamma proteobacterium SS-5 |
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Putative Gamma proteobacterium SS-5 RM systems
Ref: Geurink,C.J. et al. unpublished
REBASE ref # 29704
Complete sequence: 3,729,461 bp
GenBank #: CP032508
REBASE acronym: GprSS5
Org_num: 37733
All begin D5125_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6620 | glutamate synthase subunit beta | |||
| 6630 | R | Zsp751ORFBP (70% identity) | GprSS5ORF6650P | |
| 6635 | nucleotidyltransferase domain-containing | |||
| 6640 | Fic family protein | |||
| 6645 | S | S.Ssp510ORF11160P (35% identity) | S.GprSS5ORF6650P | |
| 6650 | M | M.TspMZORF3181P (83% identity) | M.GprSS5ORF6650P | |
| 6655 | type II toxin-antitoxin system RelE/ParE family | |||
| 8975 | helix-turn-helix domain-containing protein | |||
| 8980 | M | M.Pse18267IV (95% identity) | M.GprSS5ORF8980P | |
| 8985 | DUF1016 family protein | |||
| 8990 | S | S2.GprSS5ORF8980P (100% identity) | S.GprSS5ORF8980P | |
| 8995 | DNA binding domain-containing protein | |||
| 9000 | Appr-1-p processing protein | |||
| 9005 | R | Psp1480ORF8930P (94% identity) | GprSS5ORF8980P | |
| 9010 | response regulator | |||
| 10010 | 255 aa hypothetical protein | |||
| 10020 | M | M.Pae1TORF230150P (40% identity) | M.GprSS5ORF10020AP | |
| 10025 | ATP-binding protein | |||
| 10030 | IS21 family transposase | |||
| 10035 | M | M.TthFOKN1ORF207P (29% identity) | M.GprSS5ORF10020BP | |
| 10040 | Abi family protein | |||
| 10045 | DUF91 domain-containing protein | |||
| 10050 | S | S2.Dol6ORF3600P (44% identity) | S.GprSS5ORF10020P | |
| 10055 | R | Mwh3033VIP (49% identity) | GprSS5ORF10020P | |
| 10060 | form I ribulose bisphosphate carboxylase large | |||
| 10860 | helix-turn-helix transcriptional regulator | |||
| 10865 | M | M.GsuRed1VI (91% identity) | M.GprSS5ORF10865P | |
| 10870 | DNA binding domain-containing protein | |||
| 10875 | S | S.Tvi198ORF3907P (46% identity) | S.GprSS5ORF10865P | |
| 10880 | transposase | |||
| 10885 | DNA binding domain-containing protein | |||
| 10895 | R | Dac2973ORF1007P (83% identity) | GprSS5ORF10865P | |
| 10900 | tetratricopeptide repeat protein | |||
| 12010 | IS1595 family transposase | |||
| 12015 | S | S.SdeB26ORF956P (50% identity) | S.GprSS5ORF12030P | |
| 12020 | type II toxin-antitoxin system MqsA family | |||
| 12025 | DUF4258 domain-containing protein | |||
| ??? | M | M.Bgl391ORF10550P (45% identity) | M.GprSS5ORF12030P | |
| 12035 | R | Rph122ORF2902P (55% identity) | GprSS5ORF12030P | |
| 12040 | 1353 aa hypothetical protein | |||
| 13010 | PIN domain nuclease | |||
| 13015 | M | M.GprSS5ORF2665P (95% identity) | M.GprSS5ORF13015P | |
| 13025 | endonuclease domain-containing protein | |||
| 13030 | S | S.CfrMH15I (12% identity) | S1.GprSS5ORF13015P | |
| 13035 | ISNCY family transposase | |||
| ??? | S | S.Sen5791ORF3809P (21% identity) | S2.GprSS5ORF13015P | |
| 13045 | type II toxin-antitoxin system PrlF family | |||
| 15250 | helix-turn-helix transcriptional regulator | |||
| 15255 | R | VchSA3GORF11990P (87% identity) | GprSS5ORF15265P | |
| 15260 | GxxExxY protein | |||
| 15265 | M | M.DmuORFBP (96% identity) | M.GprSS5ORF15265P | |
| 15270 | virulence RhuM family protein | |||
| 15275 | S | S.TspB301ORF5295P (62% identity) | S.GprSS5ORF15265P | |
| 15280 | Fic family protein | |||
| 605 | C40 family peptidase | |||
| 610 | R | Pin2838IP (42% identity) | GprSS5ORF635P | |
| 615 | transposase | |||
| ??? | S | S.Fsp34518ORFDP (27% identity) | S.GprSS5ORF635P | |
| 630 | type II toxin-antitoxin system VapC family | |||
| 635 | M | M.DinA2ORF5140P (84% identity) | M.GprSS5ORF635P | |
| 640 | BrnT family toxin | |||
| 2660 | 79 aa hypothetical protein | |||
| 2665 | M | M.GprSS5ORF13015P (95% identity) | M.GprSS5ORF2665P | |
| 2670 | PIN domain nuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7855 | DEAD/DEAH box helicase | |||
| 7860 | M | M.Mae44ORF3391P (89% identity) | M.GprSS5ORF7860P | |
| 7865 | 369 aa hypothetical protein | |||
| 8230 | IS4 family transposase | |||
| 8235 | M | M.GliD10ORF837P (79% identity) | M.GprSS5ORF8235P | |
| 8240 | R | Phy13dORFAP (70% identity) | GprSS5ORF8235P | |
| 8245 | AmmeMemoRadiSam system radical SAM enzyme | |||
| 9545 | malate dehydrogenase | |||
| 9550 | M | M.PaeZa5ORFCP (66% identity) | M.GprSS5ORF9550P | |
| 9555 | DUF4928 family protein | |||
| 12465 | outer membrane protein assembly factor BamC | |||
| 12470 | M | M.Mme286ORFX1P (72% identity) | M.GprSS5ORF12470P | |
| 12475 | R | PaesPA2ORF33320P (89% identity) | GprSS5ORF12470P | |
| 12480 | polyhydroxyalkanoate synthesis repressor PhaR | |||
| 17155 | histidine phosphatase family protein | |||
| 14005 | M | M.GprSS5ORF3420P (100% identity) | M.GprSS5ORF14005P | |
| 14010 | IS66 family transposase | |||
| 14310 | IS66 family transposase | |||
| 14315 | M | M.GprSS5ORF3420P (100% identity) | M.GprSS5ORF14315P | |
| 14320 | GspH/FimT family pseudopilin | |||
| 14825 | type II toxin-antitoxin system HicA family | |||
| 14830 | M | M.GprSS5ORF3420P (100% identity) | M.GprSS5ORF14830P | |
| 14835 | IS66 family transposase | |||
| 15340 | GxxExxY protein | |||
| 15345 | RM | DvuRCH1ORF1296P (71% identity) | GprSS5ORF15345P | |
| 15350 | S | S.AspSHORF9270P (88% identity) | S.GprSS5ORF15345P | |
| 15355 | BREX-1 system phosphatase PglZ type A | |||
| 15740 | DUF3780 domain-containing protein | |||
| 15750 | M | M.PspT8ORF15205P (76% identity) | M.GprSS5ORF15750P | |
| 15755 | SAM-dependent methyltransferase | |||
| 855 | DEAD/DEAH box helicase family protein | |||
| 865 | M | M.AprV6ORF6615P (45% identity) | M.GprSS5ORF865P | |
| 870 | 84 aa hypothetical protein | |||
| 2785 | tetratricopeptide repeat protein | |||
| 2790 | M | M.GprSS5ORF3420P (87% identity) | M.GprSS5ORF2790P | |
| 2795 | IS66 family transposase | |||
| 3410 | M50 family metallopeptidase | |||
| 3415 | M | M.GprBW2ORF12835P (57% identity) | M.GprSS5ORF3415P | |
| 3420 | DNA adenine methylase | |||
| 3425 | IS66 family transposase | |||
| 3430 | SAM-dependent DNA methyltransferase | |||
| 3435 | R | GprBW2ORF12835P (75% identity) | GprSS5ORF3415P | |
| 3440 | type II toxin-antitoxin system death-on-curing | |||
| 3415 | Eco57I restriction-modification methylase | |||
| 3420 | M | M.GprSS5ORF14830P (100% identity) | M.GprSS5ORF3420P | |
| 3425 | IS66 family transposase | |||
| 3925 | 111 aa hypothetical protein | |||
| 3930 | M | M.GprSS5ORF3420P (99% identity) | M.GprSS5ORF3930P | |
| 3940 | ISAzo13 family transposase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5945 | IS630 family transposase | |||
| 5950 | R | Nsp212ORF1503P (65% identity) | GprSS5ORF5970P | |
| 5955 | DUF1016 family protein | |||
| 5960 | IS4 family transposase | |||
| 5965 | DUF1016 family protein | |||
| 5970 | M | M.Gsu6258ORF4900P (75% identity) | M.GprSS5ORF5970P | |
| 5975 | DUF4276 family protein | |||