Escherichia coli F3398 |
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Putative Escherichia coli F3398 RM systems
Ref: Allue-Guardia,A. et al. unpublished
REBASE ref # 29284
| Sequence length: | GenBank #: | |
| Chromosome: | 5,381,728 bp | CP040311 |
| plasmid pO157: | 92,909 bp | CP040312 |
REBASE acronym: EcoF3398
Org_num: 36722
All begin FEL04_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3220 | endoribonuclease SymE | |||
| 3225 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoF3398ORF3230P |
| 3230 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.EcoF3398ORF3230P |
| 3235 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoF3398ORF3230P |
| 3240 | DUF262 domain-containing protein | |||
| 10205 | M48 family metallopeptidase | |||
| 10210 | R | EcoRC1ORF26055P (100% identity) | CCAYNNNNNGTTY | EcoF3398ORF10230P |
| 10215 | macro domain-containing protein | |||
| 10220 | DUF4433 domain-containing protein | |||
| 10225 | S | S.Ecos1613ORF5225P (100% identity) | CCAYNNNNNGTTY | S.EcoF3398ORF10230P |
| 10230 | M | M.Ecos1613ORF5225P (100% identity) | CCAYNNNNNGTTY | M.EcoF3398ORF10230P |
| 10235 | 64 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1670 | 65 aa hypothetical protein | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.EcoF3398ORF1675P | |
| 1685 | Eae protein | |||
| 2940 | transposase | |||
| 2945 | R | EcosPA8ORF17350P (100% identity) | EcoF3398ORF2945P | |
| 2950 | N-acetylneuraminate epimerase | |||
| 2980 | DEAD/DEAH box helicase | |||
| 2985 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoF3398ORF2985P |
| 12250 | TrmB family transcriptional regulator | |||
| 12255 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoF3398ORF12255P | |
| 12270 | 61 aa hypothetical protein | |||
| 16665 | drug/metabolite exporter YedA | |||
| 16670 | V | V.EcosPA8DcmP (100% identity) | V.EcoF3398DcmP | |
| 16675 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoF3398DcmP |
| 16680 | phosphohydrolase | |||
| 24155 | DNA-binding transcriptional regulator Fis | |||
| 24160 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoF3398ORF24160P |
| 24165 | DUF2556 domain-containing protein | |||
| 24690 | ribulose-phosphate 3-epimerase | |||
| 24695 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoF3398DamP |
| 24700 | cell division protein DamX | |||
| plasmid pO157 | ||||
| 27370 | 101 aa hypothetical protein | |||
| 27375 | M | M.EcosPA8ORF27775P (100% identity) | M.EcoF3398ORF27375P | |
| 27380 | 73 aa hypothetical protein | |||