Escherichia coli YPE3 |
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Putative Escherichia coli YPE3 RM systems
Ref: Li,R. et al. unpublished
REBASE ref # 29340
| Sequence length: | GenBank #: | |
| Chromosome: | 4,662,393 bp | CP041452 |
| plasmid pYPE3-114k: | 114,322 bp | CP041451 |
REBASE acronym: EcoYPE3
Org_num: 36817
All begin FNP78_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20375 | IS3-like element IS2 family transposase | |||
| 20380 | M | M.EcoYPE12ORF21775P (100% identity) | M.EcoYPE3ORF20380P | |
| 20385 | S | S.EcoYPE12ORF21775P (100% identity) | S.EcoYPE3ORF20380P | |
| 20390 | R | EcoYPE12ORF21775P (100% identity) | EcoYPE3ORF20380P | |
| 20400 | NADPH-dependent aldehyde reductase Ahr | |||
| plasmid pYPE3-114k | ||||
| 515 | 71 aa hypothetical protein | |||
| 520 | M | M.EcoPD4ORF23395P (99% identity) | M.EcoYPE3ORF520P | |
| 525 | S | S.EcoH45ORFAP (77% identity) | S.EcoYPE3ORF520P | |
| 530 | R | EcosE1ORFHP (95% identity) | EcoYPE3ORF520P | |
| 535 | DNA modification methylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2390 | cell division protein DamX | |||
| 2395 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoYPE3DamP |
| 2400 | ribulose-phosphate 3-epimerase | |||
| 3040 | DUF2556 domain-containing protein | |||
| 3045 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoYPE3ORF3045P |
| 3050 | DNA-binding transcriptional regulator Fis | |||
| 9825 | phosphohydrolase | |||
| 9830 | M | M.SspS13DcmP (100% identity) | CCWGG | M.EcoYPE3DcmP |
| 9835 | V | V.SsoSE61DcmP (100% identity) | V.EcoYPE3DcmP | |
| 9840 | drug/metabolite exporter YedA | |||
| 18240 | 379 aa hypothetical protein | |||
| 18245 | R | EcoYPE12ORF19645P (100% identity) | EcoYPE3ORF18250P | |
| 18250 | M | M.EcoYPE12ORF19645P (100% identity) | M.EcoYPE3ORF18250P | |
| 18255 | 257 aa hypothetical protein | |||
| 20345 | HNH endonuclease | |||
| 20350 | R | SflFF17ORF19275P (100% identity) | EcoYPE3ORF20350P | |
| 20355 | restriction endonuclease | |||
| plasmid pYPE3-114k | ||||
| 580 | 76 aa hypothetical protein | |||
| 585 | M | M.Sso8361ORFCP (100% identity) | M.EcoYPE3ORF585P | |
| 590 | 269 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20350 | HNH endonuclease | |||
| 20355 | R | EcoYPE12McrCP (100% identity) | EcoYPE3McrCP | |
| 20360 | McrB family protein | |||
| 20355 | restriction endonuclease | |||
| 20360 | R | EcoYPE12McrBP (100% identity) | EcoYPE3McrBP | |
| 20365 | DUF4942 domain-containing protein | |||