Escherichia coli YPE10 |
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Putative Escherichia coli YPE10 RM systems
Ref: Li,R. et al. unpublished
REBASE ref # 29340
| Sequence length: | GenBank #: | |
| Chromosome: | 4,860,533 bp | CP041448 |
| plasmid pYPE10-190k-tetX4: | 190,128 bp | CP041449 |
| plasmid pYPE10-78k: | 78,706 bp | CP041444 |
REBASE acronym: EcoYPE10
Org_num: 36815
All begin FNP79_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9350 | IS5-like element ISKpn26 family transposase | |||
| 9355 | R | SflFF35ORF18280P (28% identity) | EcoYPE10ORF9380BP | |
| 9360 | IS4-like element ISVsa5 family transposase | |||
| 9365 | sodium/glutamate symporter | |||
| 9370 | R | Efe38C01ORF7960P (72% identity) | EcoYPE10ORF9380AP | |
| 9375 | S | S.SflN97ORF14060P (100% identity) | S.EcoYPE10ORF9380P | |
| 9380 | M | M.SflN97ORF14060P (100% identity) | M.EcoYPE10ORF9380P | |
| 9385 | GTPase family protein | |||
| 14230 | M48 family metallopeptidase | |||
| 14235 | R | Eco26A1ORF1060P (99% identity) | EcoYPE10ORF14250P | |
| 14240 | YecA family protein | |||
| 14245 | S | S.EcoN100ORF11070P (62% identity) | S.EcoYPE10ORF14250P | |
| 14250 | M | M.EcoSHP24ORF10835P (80% identity) | M.EcoYPE10ORF14250P | |
| 14255 | 376 aa hypothetical protein | |||
| 21225 | IS3-like element IS3 family transposase | |||
| 21230 | M | M.EcoG49ORF19090P (100% identity) | M.EcoYPE10ORF21230P | |
| 21235 | S | S.EcoH7ORF11345P (100% identity) | S.EcoYPE10ORF21230P | |
| 21240 | endoribonuclease SymE | |||
| 21455 | IS1 family transposase | |||
| 21460 | S | S2.EcoPSJ12ORF23060P (75% identity) | S.EcoYPE10ORF21460P | |
| 21465 | R | EcoYPE3ORF20380P (100% identity) | EcoYPE10ORF21460P | |
| 21475 | NADPH-dependent aldehyde reductase Ahr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2315 | cell division protein DamX | |||
| 2320 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoYPE10DamP |
| 2325 | ribulose-phosphate 3-epimerase | |||
| 2970 | DUF2556 domain-containing protein | |||
| 2975 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoYPE10ORF2975P |
| 2980 | DNA-binding transcriptional regulator Fis | |||
| 14575 | drug/metabolite exporter YedA | |||
| 14580 | V | V.SsoSE61DcmP (100% identity) | V.EcoYPE10DcmP | |
| 14585 | M | M.SspS13DcmP (100% identity) | CCWGG | M.EcoYPE10DcmP |
| 14590 | phosphohydrolase | |||
| 15175 | NinE family protein | |||
| 15180 | M | M.SflN97ORF15810P (99% identity) | GATC | M.EcoYPE10ORF15180P |
| 15185 | recombination protein NinB | |||
| 17200 | phage holin, lambda family | |||
| 17205 | M | M.Efe11WORF13300P (100% identity) | M.EcoYPE10ORF17205P | |
| 17210 | TrmB family transcriptional regulator | |||
| 17240 | LexA family transcriptional regulator | |||
| 17245 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoYPE10ORF17245P |
| 17250 | PerC family transcriptional regulator | |||
| 20875 | phage lysis protein EssD | |||
| 20880 | M | M.Sso63633ORF22290P (100% identity) | M.EcoYPE10ORF20880P | |
| 20885 | 67 aa hypothetical protein | |||
| 20910 | LexA family transcriptional regulator | |||
| 20915 | M | M.Sso90ORF15820P (99% identity) | GATC | M.EcoYPE10ORF20915P |
| 20920 | PerC family transcriptional regulator | |||
| 21445 | HNH endonuclease | |||
| 21450 | R | SflFF17ORF19275P (52% identity) | EcoYPE10ORF21450P | |
| 21455 | IS1 family transposase | |||
| plasmid pYPE10-190k-tetX4 | ||||
| 24875 | 56 aa hypothetical protein | |||
| 24880 | M | M.Sen23ORF25130P (100% identity) | M.EcoYPE10ORF24880P | |
| 24885 | thermonuclease family protein | |||
| 25355 | DNA-binding protein | |||
| 25360 | M | M.Ype21801ORF197P (100% identity) | M.EcoYPE10ORF25360P | |
| 25365 | 273 aa hypothetical protein | |||
| plasmid pYPE10-78k | ||||
| 185 | recombinase family protein | |||
| 190 | R | Ubap201ORF4P (100% identity) | CCWGG | EcoYPE10ORF195P |
| 195 | M | M.Ubap201ORF4P (100% identity) | CCWGG | M.EcoYPE10ORF195P |
| 200 | IS1 family transposase | |||