Pedobacter species CJ43 |
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Putative Pedobacter species CJ43 RM systems
Ref: Lee,D.-H. et al. unpublished
REBASE ref # 29925
Complete sequence: 3,854,044 bp
GenBank #: CP043329
REBASE acronym: PspCJ43
Org_num: 38485
All begin FYC62_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3985 | rhodopsin | |||
| 3990 | M | M.Fsp316ORF12610P (76% identity) | M.PspCJ43ORF3990P | |
| 3995 | S | S.Sba117ORF4813P (43% identity) | S.PspCJ43ORF3990P | |
| 4000 | R | MspNp10ORF3939P (73% identity) | PspCJ43ORF3990P | |
| 4005 | 262 aa hypothetical protein | |||
| 4590 | 186 aa hypothetical protein | |||
| 4595 | M | M.GspMT6ORF14225P (77% identity) | M.PspCJ43ORF4595P | |
| 4600 | S | S.GspMT6ORF14225P (78% identity) | S.PspCJ43ORF4595P | |
| 4605 | 328 aa hypothetical protein | |||
| 4610 | AAA family ATPase | |||
| 4615 | DUF4276 family protein | |||
| 4620 | virulence RhuM family protein | |||
| 4625 | R | SspNJ44ORFEP (90% identity) | PspCJ43ORF4595P | |
| 4630 | FKBP-type peptidyl-prolyl cis-trans isomerase | |||
| 13020 | 189 aa hypothetical protein | |||
| 13025 | M | M.Prh8ORF12350P (84% identity) | M.PspCJ43ORF13025P | |
| 13030 | KilA-N domain-containing protein | |||
| 13035 | S | S.Fha23008ORFFP (42% identity) | S.PspCJ43ORF13025P | |
| 13040 | DUF3800 domain-containing protein | |||
| 13045 | 175 aa hypothetical protein | |||
| 13050 | R | Fsp922ORF2900P (88% identity) | PspCJ43ORF13025P | |
| 13055 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3135 | ATP-binding protein | |||
| 3140 | M | M.Fsp34515ORFBP (79% identity) | M.PspCJ43ORF3140P | |
| 3145 | DUF262 domain-containing protein | |||
| 3145 | DUF262 domain-containing protein | |||
| 3150 | RM | Ssp1A4ORFDP (15% identity) | PspCJ43ORF3150P | |
| 3155 | 233 aa hypothetical protein | |||
| 3205 | 551 aa hypothetical protein | |||
| 3210 | RM | TspS323ORF930P (77% identity) | PspCJ43ORF3210P | |
| 3215 | M | M.TspS323ORF930P (83% identity) | M.PspCJ43ORF3210P | |
| 3220 | DUF4844 domain-containing protein | |||
| 4500 | helix-turn-helix transcriptional regulator | |||
| 4505 | M | M.FpsPuORF11500P (54% identity) | M.PspCJ43ORF4505P | |
| 4510 | 83 aa hypothetical protein | |||
| 4700 | mechanosensitive ion channel | |||
| 4705 | RM | PglDD6bORF17860P (97% identity) | PspCJ43ORF4705P | |
| 4710 | DUF2971 domain-containing protein | |||
| 6445 | IS1182 family transposase | |||
| 6450 | M | M.Csp122ORF2550P (90% identity) | M.PspCJ43ORF6450P | |
| 6455 | R | EbrSE13ORF13175P (79% identity) | PspCJ43ORF6450P | |
| 6460 | IS110 family transposase | |||
| 9660 | 216 aa hypothetical protein | |||
| 9665 | RM | PglDD6bORF8080P (100% identity) | PspCJ43ORF9665P | |
| 9670 | 212 aa hypothetical protein | |||
| 10675 | glycoside hydrolase family 43 protein | |||
| 10680 | M | M.PglDD6bORF29460P (100% identity) | M.PspCJ43ORF10680P | |
| 10685 | RM | PglDD6bORF29460P (100% identity) | PspCJ43ORF10680P | |
| 10690 | 165 aa hypothetical protein | |||
| 10980 | DUF2490 domain-containing protein | |||
| 10985 | R | Esp427ORF11900P (94% identity) | PspCJ43ORF10990P | |
| 10990 | M | M.Esp427ORF11900P (92% identity) | M.PspCJ43ORF10990P | |
| 10995 | SDR family oxidoreductase | |||
| 13800 | succinate dehydrogenase/fumarate reductase | |||
| 13805 | RM | PglDD6bORF20730P (99% identity) | PspCJ43ORF13805P | |
| 13810 | IS200/IS605 family transposase | |||
| 15910 | HNH endonuclease | |||
| 15915 | M | M.CloLW9ORF3186P (91% identity) | M.PspCJ43ORF15915P | |
| 15920 | dTDP-4-dehydrorhamnose 3,5-epimerase | |||
| 16610 | redoxin domain-containing protein | |||
| 16615 | RM | PglDD6bORF4100P (86% identity) | PspCJ43ORF16615P | |
| 16625 | nuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16850 | 260 aa hypothetical protein | |||
| 16855 | R | PspM13McrBP (28% identity) | PspCJ43McrBP | |
| 16860 | R | FspSJP92McrCP (49% identity) | PspCJ43McrCP | |
| 16865 | cation-translocating P-type ATPase | |||