Helicobacter pylori TN2wt |
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Putative Helicobacter pylori TN2wt RM systems
Ref: Suzuki,R. et al. unpublished
REBASE ref # 29729
Complete sequence: 1,604,952 bp
GenBank #: AP019730
REBASE acronym: HpyTN2
Org_num: 37798
All begin DO80_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5000 | polyphosphate kinase | |||
| 5010 | S | S.HpyJ026ORF2285P (100% identity) | S.HpyTN2ORF5020P | |
| 5020 | M | M.Hpy04ORFSP (96% identity) | M.HpyTN2ORF5020P | |
| ??? | R | HpyK043ORF2240P (95% identity) | HpyTN2ORF5020P | |
| 5050 | 631 aa hypothetical protein | |||
| 5580 | modification methylase HaeIII | |||
| 5590 | M | M.Hpy1838CII (98% identity) | M.HpyTN2ORF5590P | |
| 5600 | S | S.HpyOK308ORFRP (52% identity) | S1.HpyTN2ORF5590P | |
| 5610 | S | S.HpyJSHR3ORF10540P (38% identity) | S2.HpyTN2ORF5590P | |
| 5620 | R | HpyJ028ORF2730P (98% identity) | HpyTN2ORF5590P | |
| 5630 | hydroxyethylthiazole kinase | |||
| 6160 | cadmium-transporting ATPase, P-type (cadA) | |||
| 6170 | S | S.HpyK51ORF773P (97% identity) | S.HpyTN2ORF6170P | |
| 6180 | outer membrane protein HofF | |||
| 14700 | FAD-dependent thymidylate synthase | |||
| 14710 | S | S.HpyOK88ORFGP (92% identity) | S.HpyTN2ORF14720P | |
| ??? | M | M.Hpy55ORF1503P (98% identity) | M.HpyTN2ORF14720P | |
| 14740 | R | HpyTW22ORF7085P (97% identity) | HpyTN2ORF14720P | |
| 14750 | phosphonate metabolism protein PhnI | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1340 | serine O-acetyltransferase | |||
| 1350 | R | R2.HpyK029IP (95% identity) | CATG | R1.HpyTN2ORF1370P |
| 1360 | R | HpyOK108ORFAP (55% identity) | CATG | R2.HpyTN2ORF1370P |
| 1370 | M | M.HpyM26CORFGP (100% identity) | CATG | M.HpyTN2ORF1370P |
| 1380 | haloacid dehalogenase-like hydrolase | |||
| 1830 | alpha-1,2-fucosyltransferase | |||
| 1840 | M | M.HpyJ010IV (98% identity) | GATC | M.HpyTN2ORF1840P |
| 1850 | R | Hpyfe27ORF6650P (97% identity) | GATC | HpyTN2ORF1840P |
| 1860 | 53 aa hypothetical protein | |||
| 2400 | elongation factor P | |||
| ??? | R | R1.Hpy78ORF220P (99% identity) | R1.HpyTN2ORF2420P | |
| 2420 | R | Hpy55ORF208P (100% identity) | R2.HpyTN2ORF2420P | |
| 2430 | sialic acid synthase | |||
| 3260 | exodeoxyribonuclease VII large subunit | |||
| 3270 | M | M.Hpy464ORF1300P (99% identity) | TCGA | M.HpyTN2ORF3270P |
| 3280 | 146 aa hypothetical protein | |||
| 3280 | 146 aa hypothetical protein | |||
| 3290 | R | HpyK111IIIP (92% identity) | CCGG | HpyTN2ORF3300P |
| 3300 | M | M.HpyP30ORFAP (99% identity) | CCGG | M.HpyTN2ORF3300P |
| 3310 | ATP-dependent protease binding subunit (clpB) | |||
| 3770 | polysaccharide deacetylase family protein | |||
| 3780 | R | HpyJSHR3ORF4910P (97% identity) | CTNAG | HpyTN2ORF3790P |
| 3790 | M | M.HpyM6CORFIP (99% identity) | CTNAG | M.HpyTN2ORF3790P |
| 3800 | 128 aa hypothetical protein | |||
| 5180 | outer membrane protein | |||
| 5190 | M | M.HpyGU82AORFMP (100% identity) | ATTAAT | M.HpyTN2ORF5190P |
| 5200 | type II adenine specific methyltransferase | |||
| 5210 | GTP-binding protein TypA | |||
| ??? | M | M.HpyM26CORFFP (100% identity) | ACNGT | M.HpyTN2ORF5220P |
| 5240 | R | HpyOK305ORFHP (100% identity) | ACNGT | HpyTN2ORF5220P |
| 5250 | catalase-like protein | |||
| 5560 | integral membrane protein | |||
| 5570 | R | HpyJA108ORF2465P (100% identity) | HpyTN2ORF5580P | |
| 5580 | M | M.HpyOK303ORFRP (100% identity) | M.HpyTN2ORF5580P | |
| 5590 | type I restriction-modification system, | |||
| 7270 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyHP82ORF3445P (91% identity) | HpyTN2ORF7280P | |
| 7300 | outer membrane protein | |||
| 7440 | polysaccharide biosynthesis protein | |||
| 7450 | M | M.HpyT027ORF3560P (100% identity) | M.HpyTN2ORF7450P | |
| 7460 | R | HpyP82ORFEP (100% identity) | HpyTN2ORF7450P | |
| 7470 | polysaccharide biosynthesis protein | |||
| 9320 | M23/M37 family peptidase | |||
| 9330 | R | HpyM26CORFKP (95% identity) | GTAC | HpyTN2ORF9340P |
| 9340 | M | M.HpyM26CORFKP (100% identity) | GTAC | M.HpyTN2ORF9340P |
| 9350 | DNA gyrase subunit B | |||
| 9750 | flagellar hook protein FlgE | |||
| 9760 | R | Hpy3sORF5175P (96% identity) | GTNNAC | HpyTN2ORF9770P |
| 9770 | M | M.Hpyfe78ORF4310P (97% identity) | GTNNAC | M.HpyTN2ORF9770P |
| 9780 | rep helicase, single-stranded | |||
| 11060 | biotin carboxylase | |||
| 11070 | M | M.HpyMKF3ORF1054P (99% identity) | TCNNGA | M.HpyTN2ORF11070P |
| 11080 | R | HpyK112XP (100% identity) | TCNNGA | HpyTN2ORF11070P |
| 11090 | laminin subunit alpha-2 precursor | |||
| 11390 | 144 aa hypothetical protein | |||
| 11400 | M | M.HpyF210ORF1113P (99% identity) | GCGC | M.HpyTN2ORF11400P |
| 11410 | flgM protein | |||
| 12690 | cytosine-methyltransferase | |||
| 12700 | M | adenine specific DNA methyltransferase (dpnA) | M2.HpyTN2ORF12690P | |
| 12710 | TerC family integral membrane protein | |||
| 12780 | protease | |||
| ??? | R | HpyJSHR3ORF1970P (99% identity) | GANTC | HpyTN2ORF12800P |
| ??? | M | M.HpyJSHR3ORF1970P (100% identity) | GANTC | M.HpyTN2ORF12800P |
| 12820 | adenine specific DNA methyltransferase | |||
| 12810 | adenine-specific DNA methyltransferase | |||
| ??? | RM | HpyV007ORF265P (84% identity) | HpyTN2ORF12820P | |
| 12840 | nicotinate-nucleotide pyrophosphorylase | |||
| 14070 | DNA-directed DNA polymerase I | |||
| 14080 | S | S.HpyFD506ORFE1P (91% identity) | S2.HpyTN2ORF14100P | |
| 14090 | S | S1.HpyK110ORF6955P (99% identity) | S1.HpyTN2ORF14100P | |
| 14100 | RM | HpyID2ORF6760P (98% identity) | HpyTN2ORF14100P | |
| 14110 | HP1473-transformation associated protein | |||
| 14360 | permease; membrane protein | |||
| ??? | M | M2.Hpyfe88ORF155P (77% identity) | CCATC | M1.HpyTN2ORF14370P |
| ??? | M | M1.Hpyfe5ORF140P (100% identity) | CCATC | M2.HpyTN2ORF14370P |
| ??? | R | Hpyfe57ORF140P (96% identity) | CCATC | HpyTN2ORF14370P |
| 14410 | outer membrane protein HopK | |||
| 14550 | 138 aa hypothetical protein | |||
| 14560 | RM | Hpy5ORF100P (89% identity) | HpyTN2ORF14560P | |
| 14570 | 697 aa hypothetical protein | |||
| 14900 | 67 aa hypothetical protein | |||
| 14910 | M | M.HpyOK88ORFHP (99% identity) | TGCA | M.HpyTN2ORF14910P |
| 14920 | R | HpyUM032VIIIP (99% identity) | TGCA | HpyTN2ORF14910P |
| 14930 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13400 | endonuclease | |||
| 13410 | M | M.HpyF235ORFUP (99% identity) | M.HpyTN2ORF13410P | |
| 13420 | R | Hpy55ORF1371P (93% identity) | HpyTN2ORF13410P | |
| 13430 | biotin synthase | |||
| 14570 | 697 aa hypothetical protein | |||
| 14580 | R | HpyJSHR3ORF70P (98% identity) | HpyTN2ORF14590P | |
| ??? | M | M.HpyF210ORF1472P (97% identity) | M.HpyTN2ORF14590P | |
| 14610 | ATP-dependent DNA helicase RecG | |||