Helicobacter pylori G-Mx-2003-250 |
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Putative Helicobacter pylori G-Mx-2003-250 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,672,280 bp
GenBank #: CP032048
REBASE acronym: Hpy3250
Org_num: 37789
All begin D2C71_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 935 | RNA degradosome polyphosphate kinase | |||
| 945 | S | S.HpyL023ORF2305P (99% identity) | S.Hpy3250ORF950P | |
| 950 | M | M.HpyNCI22ORFE1P (100% identity) | M.Hpy3250ORF950P | |
| 955 | R | HpyNCI22ORFE1P (100% identity) | Hpy3250ORF950P | |
| 960 | DUF115 domain-containing protein | |||
| 2635 | outer membrane beta-barrel protein HofF | |||
| 2640 | S | S.HpyNCI22ORFXP (100% identity) | S.Hpy3250ORF2650P | |
| 2645 | CAAX protease | |||
| 2930 | hydroxyethylthiazole kinase | |||
| 2935 | R | HpyNCI22ORFWP (100% identity) | Hpy3250ORF2945P | |
| 2940 | S | S.HpyNCI22ORFWP (100% identity) | S.Hpy3250ORF2945P | |
| 2945 | M | M.HpyNCI22ORFWP (91% identity) | M.Hpy3250ORF2945P | |
| 2950 | type I restriction endonuclease subunit M | |||
| 5690 | M48 family peptidase | |||
| 5695 | R | HpyNCI22ORFPP (100% identity) | Hpy3250ORF5700P | |
| 5700 | M | M.HpyNCI22ORFPP (100% identity) | M.Hpy3250ORF5700P | |
| 5705 | S | S.HpyNCI22ORFPP (100% identity) | S.Hpy3250ORF5700P | |
| 5710 | thymidylate synthase (FAD) | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 65 | exodeoxyribonuclease VII large subunit | |||
| 70 | M | M.HpyNCI22IX (93% identity) | TCGA | M.Hpy3250ORF70P |
| 75 | 204 aa hypothetical protein | |||
| 75 | 204 aa hypothetical protein | |||
| ??? | R | HpyCOL303ORF1295P (89% identity) | CCGG | Hpy3250ORF85P |
| 85 | M | M.HpyNCI22ORFBP (100% identity) | CCGG | M.Hpy3250ORF85P |
| 90 | AAA family ATPase | |||
| 1030 | outer membrane beta-barrel protein | |||
| 1035 | M | M.HpyNCI22VII (100% identity) | ATTAAT | M.Hpy3250ORF1035P |
| 1040 | 264 aa hypothetical protein | |||
| 1050 | translational GTPase TypA | |||
| 1055 | M | M.HpyNCI22ORFC1P (100% identity) | ACNGT | M.Hpy3250ORF1055P |
| 1060 | R | HpyNCI22ORFC1P (100% identity) | ACNGT | Hpy3250ORF1055P |
| 1065 | DNA cytosine methyltransferase | |||
| 1060 | GIY-YIG nuclease family protein | |||
| 1065 | M | M.HpyNCI22ORFD1P (100% identity) | ACGT | M.Hpy3250ORF1065P |
| ??? | R | HpyNCI22ORFD1P (90% identity) | ACGT | Hpy3250ORF1065P |
| 1075 | catalase | |||
| 1165 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyNCI22X (100% identity) | GTAC | M.Hpy3250ORF1170P |
| ??? | R | HpyNCI22XP (100% identity) | GTAC | Hpy3250ORF1170P |
| 1180 | M23 family peptidase | |||
| 2035 | (Fe-S)-binding protein | |||
| 2040 | RM | HpyH023ORF3165P (88% identity) | Hpy3250ORF2040P | |
| 2045 | SIR2 family protein | |||
| 2145 | 3-5 exonuclease | |||
| 2150 | M | M.HpyNCI22ORFYP (100% identity) | M.Hpy3250ORF2150P | |
| 2155 | R | HpyNCI22ORFYP (100% identity) | Hpy3250ORF2150P | |
| 2160 | acetone carboxylase subunit gamma | |||
| 3250 | flagellar hook protein FlgE | |||
| ??? | R | HpyNCI22VIIIP (96% identity) | GTNNAC | Hpy3250ORF3260P |
| 3260 | M | M.HpyGM7XII (97% identity) | GTNNAC | M.Hpy3250ORF3260P |
| 3265 | ATP-dependent helicase | |||
| 4115 | acetyl-CoA carboxylase biotin carboxylase | |||
| 4120 | M | M.HpyNCI22XII (100% identity) | TCNNGA | M.Hpy3250ORF4120P |
| 4125 | R | HpyNCI22XIIP (100% identity) | TCNNGA | Hpy3250ORF4120P |
| 4130 | Laminin subunit alpha-2 precursor | |||
| 4320 | 144 aa hypothetical protein | |||
| 4325 | M | M.HpyNCI22ORFTP (100% identity) | GCGC | M.Hpy3250ORF4325P |
| 4330 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 4795 | HAD family hydrolase | |||
| 4800 | M | M.HpyNCI22I (100% identity) | CATG | M.Hpy3250ORF4800P |
| 4805 | R | HpyNCI22IP (100% identity) | CATG | Hpy3250ORF4800P |
| 4810 | serine acetyltransferase | |||
| 5520 | S41 family peptidase | |||
| ??? | R | HpyCOL302IXP (96% identity) | GANTC | Hpy3250ORF5535P |
| 5535 | M | M.HpyNCI22ORFRP (100% identity) | GANTC | M.Hpy3250ORF5535P |
| 5540 | DNA methyltransferase | |||
| 5595 | DNA-binding response regulator | |||
| 5600 | R | HpyNCI22IVP (100% identity) | TGCA | Hpy3250ORF5605P |
| 5605 | M | M.HpyNCI22IV (100% identity) | TGCA | M.Hpy3250ORF5605P |
| 5610 | 68 aa hypothetical protein | |||
| 5775 | DEAD/DEAH box helicase | |||
| 5780 | RM | HpyNCI22ORFOP (100% identity) | Hpy3250ORF5780P | |
| 5785 | 75 aa hypothetical protein | |||
| 5860 | outer membrane protein | |||
| 5865 | R | HpyNCI22XIP (100% identity) | CCATC | Hpy3250ORF5870P |
| ??? | M | M1.HpyNCI22XI (100% identity) | CCATC | M1.Hpy3250ORF5870P |
| ??? | M | M2.HpyNCI22XI (79% identity) | CCATC | M2.Hpy3250ORF5870P |
| 5880 | YjgP/YjgQ family permease | |||
| 6005 | ComF family protein | |||
| 6010 | RM | HpyNCI22ORFLP (100% identity) | Hpy3250ORF6010P | |
| 6015 | S | S.HpyMT5119ORF6960P (95% identity) | S.Hpy3250ORF6010P | |
| 6020 | DNA polymerase I | |||
| 6290 | UDP-N-acetylmuramate dehydrogenase | |||
| 6295 | M | M.HpyNCI22ORFKP (95% identity) | M.Hpy3250ORF6295P | |
| 6300 | R | HpyNCI22ORFKP (100% identity) | Hpy3250ORF6295P | |
| 6305 | glycosyltransferase family 8 protein | |||
| 6455 | response regulator | |||
| 6460 | M | M2.HpyIS1V (98% identity) | GAAGA | M1.Hpy3250ORF6460P |
| ??? | M | M2.HpyNCI22II (98% identity) | GAAGA | M2.Hpy3250ORF6460P |
| ??? | R | HpyID3IXP (96% identity) | GAAGA | Hpy3250ORF6460P |
| 6480 | DNA-binding response regulator | |||
| 7015 | agmatine deiminase | |||
| 7020 | M | M1.HpyNCI22VI (100% identity) | CCTC | M1.Hpy3250ORF7020P |
| 7025 | M | M2.HpyNCI22VIP (100% identity) | CCTC | M2.Hpy3250ORF7020P |
| 7030 | R | HpyNCI22VIP (99% identity) | CCTC | Hpy3250ORF7020P |
| 7035 | restriction endonuclease | |||
| 7030 | HNH endonuclease | |||
| 7035 | R | HpyNCI22VP (100% identity) | CCTTC | Hpy3250ORF7040P |
| 7040 | M | M.HpyNCI22V (100% identity) | CCTTC | M.Hpy3250ORF7040P |
| 7045 | sodium/proline symporter PutP | |||
| 7235 | [acyl-carrier-protein] S-malonyltransferase | |||
| 7245 | R | HpyNCI22IIIP (100% identity) | GATC | Hpy3250ORF7250P |
| 7250 | M | M.HpyNCI22III (100% identity) | GATC | M.Hpy3250ORF7250P |
| 7255 | alpha-1,2-fucosyltransferase | |||
| 7315 | HNH endonuclease | |||
| 7320 | M | M.HpySP707XV (100% identity) | M.Hpy3250ORF7320P | |
| 7325 | HAMP domain-containing protein | |||
| 7675 | elongation factor P | |||
| 7680 | M | M.HpySP402ORF875P (100% identity) | M.Hpy3250ORF7680P | |
| 7685 | R | R1.HpyNCI22ORFCP (100% identity) | R1.Hpy3250ORF7680P | |
| 7690 | R | R2.HpyNCI22ORFCP (100% identity) | R2.Hpy3250ORF7680P | |
| 7695 | pseudaminic acid synthase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5760 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyNCI22ORFNP (100% identity) | M.Hpy3250ORF5765P | |
| 5775 | R | HpyNCI22ORFNP (100% identity) | Hpy3250ORF5765P | |
| 5780 | class I SAM-dependent DNA methyltransferase | |||
| 6370 | type III restriction endonuclease subunit R | |||
| ??? | R | HpyNCI22ORFJP (100% identity) | Hpy3250ORF6380P | |
| 6380 | M | M.HpyNCI22ORFJP (100% identity) | M.Hpy3250ORF6380P | |
| 6385 | DNA/RNA non-specific endonuclease | |||
| 6440 | rod shape-determining protein MreC | |||
| 6445 | R | HpyNCI22ORFHP (100% identity) | Hpy3250ORF6450P | |
| 6450 | M | M.HpyNCI22ORFHP (100% identity) | M.Hpy3250ORF6450P | |
| 6455 | response regulator | |||