Helicobacter pylori G-Mx-2003-93 |
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Putative Helicobacter pylori G-Mx-2003-93 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,632,682 bp
GenBank #: CP032043
REBASE acronym: Hpy0393
Org_num: 37790
All begin D2C74_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 545 | M48 family peptidase | |||
| 550 | R | HpyNCI2aORFFP (100% identity) | Hpy0393ORF555P | |
| 555 | M | M.HpyNCI2aORFFP (100% identity) | M.Hpy0393ORF555P | |
| 560 | S | S.HpyNCI2aORFFP (100% identity) | S.Hpy0393ORF555P | |
| 565 | FAD-dependent thymidylate synthase | |||
| 5585 | hydroxyethylthiazole kinase | |||
| 5590 | R | HpyNCI2aXIP (100% identity) | Hpy0393ORF5600P | |
| 5595 | S | S.HpyNCI2aXI (100% identity) | S.Hpy0393ORF5600P | |
| 5600 | M | M.HpyNCI2aXI (95% identity) | M.Hpy0393ORF5600P | |
| 5605 | PAP2 family protein | |||
| 5865 | DUF115 domain-containing protein | |||
| 5870 | R | HpyNCI2aORFMP (100% identity) | Hpy0393ORF5875P | |
| 5875 | M | M.HpyNCI2aORFMP (100% identity) | M.Hpy0393ORF5875P | |
| 5880 | S | S.HpyNCI2aORFMP (100% identity) | S.Hpy0393ORF5875P | |
| 5890 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 450 | elongation factor Ts | |||
| 455 | R | HpyNCI2aVIP (100% identity) | TGCA | Hpy0393ORF460P |
| ??? | M | M.HpyNCI2aVI (100% identity) | TGCA | M.Hpy0393ORF460P |
| 470 | 68 aa hypothetical protein | |||
| 625 | DEAD/DEAH box helicase | |||
| ??? | RM | HpyNCI2VII (100% identity) | Hpy0393ORF630P | |
| 640 | 69 aa hypothetical protein | |||
| 720 | AlwI family type II restriction endonuclease | |||
| 725 | M | M.HpyNCI2ORFZP (94% identity) | M.Hpy0393ORF725P | |
| 730 | type II methylase | |||
| 860 | ComF family protein | |||
| 865 | RM | HpyNCI2aORFAP (100% identity) | Hpy0393ORF865P | |
| 870 | S | S.HpyNCI2aORFAP (100% identity) | S.Hpy0393ORF865P | |
| 875 | DNA polymerase I | |||
| 1305 | site-specific DNA-methyltransferase | |||
| 1310 | M | M1.HpyLI13III (99% identity) | GAAGA | M1.Hpy0393ORF1310P |
| 1315 | M | M2.HpyNCI2aII (100% identity) | GAAGA | M2.Hpy0393ORF1310P |
| 1320 | R | HpyNCI2aIIP (98% identity) | GAAGA | Hpy0393ORF1310P |
| 1325 | DNA-binding response regulator | |||
| 1375 | carboxylating nicotinate-nucleotide | |||
| 1380 | RM | HpyNCI2ORFRP (100% identity) | Hpy0393ORF1380P | |
| 1385 | site-specific DNA-methyltransferase | |||
| 1380 | DNA methyltransferase | |||
| 1385 | M | M.HpyNCI2IV (100% identity) | GANTC | M.Hpy0393ORF1385P |
| 1390 | R | HpyNCI2aIVP (100% identity) | GANTC | Hpy0393ORF1385P |
| 1395 | S41 family peptidase | |||
| 2125 | serine O-acetyltransferase | |||
| 2130 | R | HpyU002IP (100% identity) | CATG | Hpy0393ORF2135P |
| 2135 | M | M.HpyNCI2aI (100% identity) | CATG | M.Hpy0393ORF2135P |
| 2140 | HAD family hydrolase | |||
| 2615 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2620 | M | M.HpyNCI2aORFWP (100% identity) | GCGC | M.Hpy0393ORF2620P |
| 2625 | 144 aa hypothetical protein | |||
| 2815 | Laminin subunit alpha-2 precursor | |||
| 2820 | R | HpyNCI2aORFVP (100% identity) | TCNNGA | Hpy0393ORF2825P |
| 2825 | M | M.HpyNCI2aORFVP (100% identity) | TCNNGA | M.Hpy0393ORF2825P |
| 2830 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3530 | ATP-dependent helicase | |||
| 3535 | M | M.HpyB38ORF894P (98% identity) | GTNNAC | M.Hpy0393ORF3535P |
| 3540 | R | HpyNCI2aORFUP (100% identity) | GTNNAC | Hpy0393ORF3535P |
| 3545 | flagellar hook protein FlgE | |||
| 3745 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyNCI2aVII (100% identity) | GTAC | M.Hpy0393ORF3750P |
| ??? | R | HpyNCI2VIIIP (100% identity) | GTAC | Hpy0393ORF3750P |
| 3760 | M23 family peptidase | |||
| 4640 | (Fe-S)-binding protein | |||
| 4645 | RM | HpyNCI2ORFLP (100% identity) | Hpy0393ORF4645P | |
| 4650 | 420 aa hypothetical protein | |||
| 5755 | catalase | |||
| 5760 | M | M.HpyNCI2aORFNP (100% identity) | M.Hpy0393ORF5760P | |
| 5765 | GIY-YIG nuclease family protein | |||
| 5760 | DNA cytosine methyltransferase | |||
| 5765 | R | HpyNCI2aORFOP (100% identity) | ACNGT | Hpy0393ORF5770P |
| 5770 | M | M.HpyNCI2ORFHP (100% identity) | ACNGT | M.Hpy0393ORF5770P |
| 5775 | translational GTPase TypA | |||
| 5780 | lipopolysaccharide heptosyltransferase family | |||
| 5785 | M | M.HpyNCI2V (100% identity) | ATTAAT | M.Hpy0393ORF5785P |
| 5790 | outer membrane beta-barrel protein | |||
| 6765 | AAA family ATPase | |||
| 6770 | M | M.HpyNCI2aIX (100% identity) | CCGG | M.Hpy0393ORF6770P |
| ??? | R | HpyZ004VP (96% identity) | CCGG | Hpy0393ORF6770P |
| 6780 | 69 aa hypothetical protein | |||
| 6780 | 69 aa hypothetical protein | |||
| 6785 | M | M.HpyNCI2ORFEP (87% identity) | TCGA | M.Hpy0393ORF6785P |
| 6790 | exodeoxyribonuclease VII large subunit | |||
| 7195 | pseudaminic acid synthase | |||
| 7200 | R | R2.HpyNCI2aORFJP (100% identity) | R1.Hpy0393ORF7215P | |
| 7205 | R | R1.HpyNCI2aORFJP (100% identity) | R2.Hpy0393ORF7215P | |
| 7210 | 256 aa hypothetical protein | |||
| 7215 | M | M.HpyNCI2aORFJP (100% identity) | M.Hpy0393ORF7215P | |
| 7220 | elongation factor P | |||
| 7635 | alpha-1,2-fucosyltransferase | |||
| 7640 | M | M.HpyNCI2aIII (100% identity) | GATC | M.Hpy0393ORF7640P |
| 7645 | 336 aa hypothetical protein | |||
| 7835 | sodium/proline symporter PutP | |||
| 7840 | R | HpyNCI2aXP (97% identity) | CCTC | Hpy0393ORF7845P |
| 7845 | M | M.HpyNCI2aX (100% identity) | CCTC | M.Hpy0393ORF7845P |
| 7850 | agmatine deiminase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 615 | ATP-dependent DNA helicase RecG | |||
| 620 | M | M.HpyNCI2aORFDP (100% identity) | M.Hpy0393ORF620P | |
| 625 | R | HpyNCI2aORFDP (100% identity) | Hpy0393ORF620P | |
| 630 | 95 aa hypothetical protein | |||
| 1225 | type III restriction endonuclease subunit R | |||
| 1230 | R | HpyNCI2aORFC1P (100% identity) | Hpy0393ORF1235P | |
| 1235 | M | M.HpyNCI2aORFC1P (100% identity) | M.Hpy0393ORF1235P | |
| 1240 | DNA/RNA non-specific endonuclease | |||
| 1295 | rod shape-determining protein MreC | |||
| 1300 | R | HpyNCI2aORFA1P (100% identity) | Hpy0393ORF1305P | |
| 1305 | M | M.HpyNCI2aORFA1P (99% identity) | M.Hpy0393ORF1305P | |
| 1310 | site-specific DNA-methyltransferase | |||