Helicobacter pylori G-Mx-2006-152 |
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Putative Helicobacter pylori G-Mx-2006-152 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,613,306 bp
GenBank #: CP032040
REBASE acronym: Hpy6152
Org_num: 37793
All begin D2C77_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 160 | DNA cytosine methyltransferase | |||
| 165 | M | M.HpyNCI28ORFA1P (100% identity) | M.Hpy6152ORF165P | |
| 170 | S | S.HpyNCI28ORFA1P (93% identity) | S.Hpy6152ORF165P | |
| 175 | restriction endonuclease subunit R | |||
| 180 | R | HpyI018ORF2820P (82% identity) | Hpy6152ORF165P | |
| 185 | hydroxyethylthiazole kinase | |||
| 460 | cadmium-translocating P-type ATPase | |||
| 465 | S | S.HpyNCI28ORFYP (100% identity) | S.Hpy6152ORF465P | |
| 470 | 323 aa hypothetical protein | |||
| 2140 | DUF115 domain-containing protein | |||
| ??? | R | HpyNCI28ORFSP (100% identity) | Hpy6152ORF2155P | |
| 2155 | M | M.HpyNCI28ORFSP (100% identity) | M.Hpy6152ORF2155P | |
| 2160 | S | S.HpyNCI28ORFSP (100% identity) | S.Hpy6152ORF2155P | |
| 2165 | restriction endonuclease subunit S | |||
| 4740 | M48 family peptidase | |||
| 4745 | R | HpyNCI28ORFLP (100% identity) | Hpy6152ORF4750P | |
| ??? | M | M.HpyNCI28ORFLP (100% identity) | M.Hpy6152ORF4750P | |
| 4760 | S | S.HpyNCI28ORFLP (100% identity) | S.Hpy6152ORF4750P | |
| 4765 | cag pathogenicity island protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 150 | PAP2 family protein | |||
| 155 | R | HpyNCI28ORFZP (99% identity) | Hpy6152ORF160P | |
| 160 | M | M.HpyU004ORF4165P (100% identity) | M.Hpy6152ORF160P | |
| 165 | type I restriction-modification system subunit | |||
| 955 | acetone carboxylase subunit gamma | |||
| 960 | R | HpyNCI39XP (100% identity) | CCNNGG | Hpy6152ORF965P |
| 965 | M | M.HpyU004V (100% identity) | CCNNGG | M.Hpy6152ORF965P |
| 970 | 3-5 exonuclease | |||
| 1060 | SIR2 family protein | |||
| 1065 | RM | HpyNCI28ORFWP (100% identity) | Hpy6152ORF1065P | |
| 1070 | (Fe-S)-binding protein | |||
| 1940 | M23 family peptidase | |||
| ??? | R | HpyNCI28IIIP (100% identity) | GTAC | Hpy6152ORF1950P |
| ??? | M | M.HpyNCI39VII (100% identity) | GTAC | M.Hpy6152ORF1950P |
| 1955 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2045 | DUF262 domain-containing protein | |||
| ??? | R | HpyNCI28ORFTP (73% identity) | ACGT | Hpy6152ORF2055P |
| 2055 | M | M.HpyPO08ORF2360P (98% identity) | ACGT | M.Hpy6152ORF2055P |
| 2060 | translational GTPase TypA | |||
| 2065 | lipopolysaccharide heptosyltransferase family | |||
| 2070 | M | M.HpyNCI28XII (100% identity) | ATTAAT | M.Hpy6152ORF2070P |
| 2075 | outer membrane beta-barrel protein | |||
| 3025 | AAA family ATPase | |||
| 3030 | M | M.HpyNCI28XI (100% identity) | CCGG | M.Hpy6152ORF3030P |
| ??? | R | HpyC122IXP (99% identity) | CCGG | Hpy6152ORF3030P |
| 3040 | 204 aa hypothetical protein | |||
| 3040 | 204 aa hypothetical protein | |||
| 3045 | M | M.HpyNCI28VII (93% identity) | TCGA | M.Hpy6152ORF3045P |
| 3050 | exodeoxyribonuclease VII large subunit | |||
| 3875 | alpha-1,2-fucosyltransferase | |||
| 3880 | M | M.HpyNCI28ORFPP (100% identity) | GATC | M.Hpy6152ORF3880P |
| 3885 | 338 aa hypothetical protein | |||
| 4075 | sodium/proline symporter PutP | |||
| 4080 | M | M.HpyNCI28ORFNP (100% identity) | M.Hpy6152ORF4080P | |
| 4085 | R | HpySP807VP (99% identity) | Hpy6152ORF4080P | |
| 4090 | HNH endonuclease | |||
| 4085 | restriction endonuclease | |||
| 4090 | R | HpyNCI28IXP (99% identity) | CCTC | Hpy6152ORF4095P |
| 4095 | M | M2.HpySP407VIP (100% identity) | CCTC | M2.Hpy6152ORF4095P |
| 4100 | M | M1.HpyNCI28IX (100% identity) | CCTC | M1.Hpy6152ORF4095P |
| 4105 | agmatine deiminase | |||
| 4645 | elongation factor Ts | |||
| 4650 | R | HpyNCI28VP (100% identity) | TGCA | Hpy6152ORFAP |
| ??? | M | M.HpyNCI28V (100% identity) | TGCA | M.Hpy6152ORFAP |
| 4660 | 68 aa hypothetical protein | |||
| 4835 | DEAD/DEAH box helicase | |||
| 4840 | RM | HpyNCI28ORFKP (100% identity) | Hpy6152ORF4840P | |
| 4845 | 178 aa hypothetical protein | |||
| 5060 | ComF family protein | |||
| 5065 | RM | HpyNCI28ORFIP (100% identity) | Hpy6152ORF5065P | |
| 5070 | S | S.HpyNCI28ORFIP (100% identity) | S.Hpy6152ORF5065P | |
| 5075 | DNA polymerase I | |||
| 5520 | response regulator | |||
| 5525 | M | M2.HpySP319VII (100% identity) | GAAGA | M1.Hpy6152ORF5525P |
| 5530 | M | M2.HpyNCI28II (100% identity) | GAAGA | M2.Hpy6152ORF5525P |
| 5535 | R | HpyNCI28IIP (100% identity) | GAAGA | Hpy6152ORF5525P |
| 5540 | DNA-binding response regulator | |||
| 5595 | DNA methyltransferase | |||
| 5600 | M | M.HpyNCI28IV (100% identity) | GANTC | M.Hpy6152ORF5600P |
| 5605 | R | HpyNCI28IVP (100% identity) | GANTC | Hpy6152ORF5600P |
| 5610 | S41 family peptidase | |||
| 6315 | serine acetyltransferase | |||
| 6320 | R | HpyNCI28IP (100% identity) | CATG | Hpy6152ORF6325P |
| 6325 | M | M.HpyNCI28I (100% identity) | CATG | M.Hpy6152ORF6325P |
| 6330 | HAD family hydrolase | |||
| 6815 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6820 | M | M.HpyNCI28ORFCP (100% identity) | M.Hpy6152ORF6820P | |
| 6825 | 144 aa hypothetical protein | |||
| 7015 | Laminin subunit alpha-2 precursor | |||
| 7020 | R | HpyNCI28VIP (100% identity) | TCNNGA | Hpy6152ORF7025P |
| 7025 | M | M.HpyNCI28VI (100% identity) | TCNNGA | M.Hpy6152ORF7025P |
| 7030 | acetyl-CoA carboxylase biotin carboxylase | |||
| 7680 | ATP-dependent helicase | |||
| 7685 | M | M.HpyPE113X (97% identity) | GTNNAC | M.Hpy6152ORF7685P |
| 7690 | R | HpyNCI28VIIIP (100% identity) | GTNNAC | Hpy6152ORF7685P |
| 7695 | flagellar hook protein FlgE | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4820 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyNCI28ORFJP (100% identity) | M.Hpy6152ORF4825P | |
| 4835 | R | HpyNCI28ORFJP (100% identity) | Hpy6152ORF4825P | |
| 4840 | class I SAM-dependent DNA methyltransferase | |||
| 5435 | biotin synthase | |||
| 5440 | R | HpyNCI28ORFHP (100% identity) | Hpy6152ORF5445P | |
| 5445 | M | M.HpyNCI28ORFHP (100% identity) | M.Hpy6152ORF5445P | |
| 5450 | DNA/RNA non-specific endonuclease | |||
| 5505 | rod shape-determining protein MreC | |||
| 5510 | R | HpyNCI28ORFFP (100% identity) | Hpy6152ORF5515P | |
| 5515 | M | M.HpyNCI28ORFFP (97% identity) | M.Hpy6152ORF5515P | |
| 5520 | response regulator | |||