Helicobacter pylori G-Mx-2006-583 |
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Putative Helicobacter pylori G-Mx-2006-583 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,645,512 bp
GenBank #: CP032039
REBASE acronym: Hpy6583
Org_num: 37795
All begin D2C78_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1605 | M48 family peptidase | |||
| 1610 | R | HpyNCI34ORFXP (100% identity) | Hpy6583ORF1615P | |
| 1615 | M | M.HpyNCI34ORFXP (100% identity) | M.Hpy6583ORF1615P | |
| 1620 | restriction endonuclease subunit S | |||
| ??? | S | S.HpyNCI34ORFXP (100% identity) | S.Hpy6583ORF1615P | |
| 1630 | FAD-dependent thymidylate synthase | |||
| 4990 | type I restriction endonuclease subunit M | |||
| 4995 | M | M.HpyNCI34VII (100% identity) | CTANNNNNNNNTGT | M.Hpy6583ORF4995P |
| 5000 | S | S.HpyNCI34VII (100% identity) | CTANNNNNNNNTGT | S.Hpy6583ORF4995P |
| 5005 | R | HpyNCI34VIIP (96% identity) | CTANNNNNNNNTGT | Hpy6583ORF4995P |
| 5010 | hydroxyethylthiazole kinase | |||
| 5285 | cadmium-translocating P-type ATPase | |||
| 5290 | S | S.HpyNCI34ORFIP (100% identity) | S.Hpy6583ORF5290P | |
| 5295 | 73 aa hypothetical protein | |||
| 6750 | DUF115 domain-containing protein | |||
| 6755 | R | HpyNCI34ORFCP (100% identity) | Hpy6583ORF6755P | |
| 6760 | relaxase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 590 | alpha-1,2-fucosyltransferase | |||
| 595 | M | M.HpyNCI34V (100% identity) | GATC | M.Hpy6583ORF595P |
| 600 | 0 aa hypothetical protein | |||
| 805 | sodium/proline symporter PutP | |||
| 810 | M | M.HpyNCI34ORFA1P (76% identity) | M.Hpy6583ORF810P | |
| 815 | terminase | |||
| 965 | 100 aa hypothetical protein | |||
| 970 | M | M2.HpyNCI34IVP (100% identity) | CCTC | M2.Hpy6583ORF970P |
| 975 | M | M1.HpySP604V (96% identity) | CCTC | M1.Hpy6583ORF970P |
| 980 | agmatine deiminase | |||
| 1510 | cytochrome c1 | |||
| 1515 | R | HpySP07VIP (100% identity) | TGCA | Hpy6583ORF1520P |
| ??? | M | M.HpyNCI34II (100% identity) | TGCA | M.Hpy6583ORF1520P |
| 1530 | 68 aa hypothetical protein | |||
| 1690 | DEAD/DEAH box helicase | |||
| 1695 | RM | HpyNCI34ORFWP (100% identity) | Hpy6583ORF1695P | |
| 1700 | DUF4065 domain-containing protein | |||
| 1910 | ComF family protein | |||
| 1915 | RM | HpyNCI34ORFUP (100% identity) | Hpy6583ORF1915P | |
| 1920 | S | S1.HpyNCI34ORFUP (100% identity) | S1.Hpy6583ORF1915P | |
| 1925 | S | S2.HpyNCI34ORFUP (87% identity) | S2.Hpy6583ORF1915P | |
| 1930 | DNA polymerase I | |||
| 2205 | UDP-N-acetylmuramate dehydrogenase | |||
| ??? | R | HpyPO12IVP (86% identity) | GAATTC | Hpy6583ORF2215P |
| 2215 | M | M.HpyNCI34ORFSP (100% identity) | GAATTC | M.Hpy6583ORF2215P |
| 2220 | glycosyltransferase family 8 protein | |||
| 2360 | site-specific DNA-methyltransferase | |||
| 2365 | M | M.HpyPE11III (99% identity) | GAAGA | M1.Hpy6583ORF2365P |
| 2370 | M | M.HpyNCI34ORFRP (74% identity) | GAAGA | M2.Hpy6583ORF2365P |
| 2375 | R | HpyC61XIP (96% identity) | GAAGA | Hpy6583ORF2365P |
| 2380 | DNA-binding response regulator | |||
| 2430 | carboxylating nicotinate-nucleotide | |||
| ??? | RM | HpyNCI34ORFPP (92% identity) | Hpy6583ORF2435P | |
| 2440 | lipopolysaccharide heptosyltransferase family | |||
| 3205 | serine O-acetyltransferase | |||
| ??? | R | HpyJO6IP (95% identity) | CATG | Hpy6583ORF3220P |
| 3220 | M | M.HpyNCI34I (100% identity) | CATG | M.Hpy6583ORF3220P |
| 3225 | HAD family hydrolase | |||
| 3690 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 3695 | M | M.HpyNCI34ORFNP (100% identity) | GCGC | M.Hpy6583ORF3695P |
| 3700 | 144 aa hypothetical protein | |||
| 3875 | Laminin subunit alpha-2 precursor | |||
| 3880 | R | HpyNCI34IIIP (100% identity) | TCNNGA | Hpy6583ORF3885P |
| 3885 | M | M.HpyNCI34III (100% identity) | TCNNGA | M.Hpy6583ORF3885P |
| 3890 | acetyl-CoA carboxylase biotin carboxylase | |||
| 4660 | ATP-dependent helicase | |||
| 4665 | M | M.HpyCO2XIII (96% identity) | GTNNAC | M.Hpy6583ORF4665P |
| 4670 | R | HpyNCI34ORFLP (100% identity) | GTNNAC | Hpy6583ORF4665P |
| 4675 | flagellar hook protein FlgE | |||
| 5770 | 3-5 exonuclease | |||
| 5775 | R | HpySP07ORF3300P (100% identity) | Hpy6583ORF5780P | |
| 5780 | M | M.HpySP610ORF3605P (100% identity) | M.Hpy6583ORF5780P | |
| 5785 | 3-5 exonuclease | |||
| 5865 | 62 aa hypothetical protein | |||
| 5870 | RM | HpyNCI34ORFGP (90% identity) | Hpy6583ORF5870P | |
| 5875 | (Fe-S)-binding protein | |||
| 6660 | catalase | |||
| 6665 | M | M.HpyNCI34ORFDP (97% identity) | M.Hpy6583ORF6665P | |
| 6670 | translational GTPase TypA | |||
| 6675 | lipopolysaccharide heptosyltransferase family | |||
| 6680 | M | M.HpyNCI34ORFEP (100% identity) | ATTAAT | M.Hpy6583ORF6680P |
| 6685 | outer membrane protein | |||
| 7660 | AAA family ATPase | |||
| 7665 | M | M.HpyNCI34ORFAP (100% identity) | CCGG | M.Hpy6583ORF7665P |
| 7670 | R | HpyH013VIIIP (96% identity) | CCGG | Hpy6583ORF7665P |
| 7675 | exodeoxyribonuclease VII large subunit | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1680 | ATP-dependent DNA helicase RecG | |||
| 1685 | M | M.HpyNCI34ORFVP (100% identity) | M.Hpy6583ORF1685P | |
| 1690 | R | HpyNCI34ORFVP (100% identity) | Hpy6583ORF1685P | |
| 1695 | class I SAM-dependent DNA methyltransferase | |||
| 2285 | 0 aa hypothetical protein | |||
| 2290 | R | HpyNCI34ORFTP (97% identity) | Hpy6583ORF2295P | |
| 2295 | M | M.HpyNCI34ORFTP (100% identity) | M.Hpy6583ORF2295P | |
| 2300 | DNA/RNA non-specific endonuclease | |||
| 2350 | rod shape-determining protein MreC | |||
| ??? | R | HpyNCI34VIP (100% identity) | Hpy6583ORF2360P | |
| 2360 | M | M.HpyNCI34VI (97% identity) | M.Hpy6583ORF2360P | |
| 2365 | site-specific DNA-methyltransferase | |||
| 6250 | 54 aa hypothetical protein | |||
| ??? | M | M.HpyNCI34ORFFP (95% identity) | M.Hpy6583ORF6255P | |
| ??? | R | HpyNCI34ORFFP (98% identity) | Hpy6583ORF6255P | |
| 6265 | 2-oxoglutarate:acceptor oxidoreductase | |||