Helicobacter pylori G-Mx-2011-124 |
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Putative Helicobacter pylori G-Mx-2011-124 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,661,266 bp
GenBank #: CP032038
REBASE acronym: Hpy1124
Org_num: 37796
All begin D2C79_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2950 | PAP2 family protein | |||
| ??? | M | M.HpyNCI53ORFUP (100% identity) | M.Hpy1124ORF2955P | |
| 2965 | S | S.HpyNCI53ORFUP (100% identity) | S.Hpy1124ORF2955P | |
| 2970 | 69 aa hypothetical protein | |||
| 2975 | R | HpyNCI53ORFUP (98% identity) | Hpy1124ORF2955P | |
| 2980 | hydroxyethylthiazole kinase | |||
| 3260 | cadmium-translocating P-type ATPase | |||
| 3265 | M | M.HpyNCI53ORFTP (100% identity) | M.Hpy1124ORF3265P | |
| 3270 | CAAX protease | |||
| 3275 | S | S.HpyNCI53ORFTP (100% identity) | S.Hpy1124ORF3265P | |
| 3280 | 65 aa hypothetical protein | |||
| 4955 | DUF115 domain-containing protein | |||
| 4960 | R | HpyNCI53ORFNP (100% identity) | CCANNNNNNTC | Hpy1124ORF4965P |
| 4965 | M | M.HpyNCI53ORFNP (100% identity) | CCANNNNNNTC | M.Hpy1124ORF4965P |
| 4970 | S | S.HpyNCI53ORFNP (100% identity) | CCANNNNNNTC | S.Hpy1124ORF4965P |
| 4975 | 0 aa hypothetical protein | |||
| 7570 | M48 family peptidase | |||
| 7575 | R | HpyNCI53ORFGP (100% identity) | Hpy1124ORF7580P | |
| 7580 | M | M.HpyNCI53ORFGP (100% identity) | M.Hpy1124ORF7580P | |
| 7585 | S | S.HpyNCI53ORFGP (100% identity) | S.Hpy1124ORF7580P | |
| 7590 | 303 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 475 | carboxylating nicotinate-nucleotide | |||
| ??? | RM | HpySP313ORF6665P (88% identity) | Hpy1124ORF480P | |
| 485 | site-specific DNA-methyltransferase | |||
| 495 | transposase | |||
| 500 | M | M.HpyPE17III (77% identity) | M.Hpy1124ORF500P | |
| 505 | R | HpyNCI53ORFA1P (100% identity) | Hpy1124ORF500P | |
| 510 | S41 family peptidase | |||
| 1255 | serine acetyltransferase | |||
| 1260 | R | HpyNCI53IP (95% identity) | CATG | Hpy1124ORF1265P |
| 1265 | M | M.HpyNCI53I (100% identity) | CATG | M.Hpy1124ORF1265P |
| 1270 | HAD family hydrolase | |||
| 1740 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1745 | M | M.HpyNCI53ORFXP (100% identity) | GCGC | M.Hpy1124ORF1745P |
| 1750 | 144 aa hypothetical protein | |||
| 1930 | Laminin subunit alpha-2 precursor | |||
| ??? | R | HpyU203XIIP (98% identity) | TCNNGA | Hpy1124ORF1945P |
| ??? | M | M.HpyNCI39IV (98% identity) | TCNNGA | M.Hpy1124ORF1945P |
| 1955 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2665 | ATP-dependent helicase | |||
| 2670 | M | M.HpyISR10IX (97% identity) | GTNNAC | M.Hpy1124ORF2670P |
| 2675 | R | HpyNCI53VP (100% identity) | GTNNAC | Hpy1124ORF2670P |
| 2680 | flagellar hook protein FlgE | |||
| 3880 | 59 aa hypothetical protein | |||
| 3885 | RM | HpySP802ORF3275P (91% identity) | Hpy1124ORF3885P | |
| 3890 | (Fe-S)-binding protein | |||
| 4745 | M23 family peptidase | |||
| ??? | R | HpyNCI53VIP (100% identity) | GTAC | Hpy1124ORF4755P |
| ??? | M | M.HpyNCI53VI (100% identity) | GTAC | M.Hpy1124ORF4755P |
| 4760 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4850 | catalase | |||
| 4855 | M | M.HpySP315ORF2225P (95% identity) | M.Hpy1124ORF4855P | |
| 4860 | GIY-YIG nuclease family protein | |||
| 4855 | DNA cytosine methyltransferase | |||
| 4860 | R | HpyNCI53IXP (100% identity) | ACNGT | Hpy1124ORF4865P |
| 4865 | M | M.HpyNCI53IX (100% identity) | ACNGT | M.Hpy1124ORF4865P |
| 4870 | translational GTPase TypA | |||
| 4875 | lipopolysaccharide heptosyltransferase family | |||
| 4880 | M | M.HpyNCI53VIII (100% identity) | ATTAAT | M.Hpy1124ORF4880P |
| 4885 | outer membrane protein | |||
| 5610 | 128 aa hypothetical protein | |||
| 5615 | M | M.HpyNCI53VII (100% identity) | CTNAG | M.Hpy1124ORF5615P |
| 5620 | R | HpyPR08VIIP (99% identity) | CTNAG | Hpy1124ORF5615P |
| 5625 | polysaccharide deacetylase | |||
| 5855 | AAA family ATPase | |||
| 5860 | M | M.HpySW27ORF1365P (43% identity) | M.Hpy1124ORF5860BP | |
| 5865 | transposase | |||
| 5870 | IS607 family transposase | |||
| 5875 | M | M.HpyPO17ORF1420P (55% identity) | M.Hpy1124ORF5860AP | |
| 5880 | endonuclease | |||
| 5875 | site-specific DNA-methyltransferase | |||
| 5880 | R | HpyPE107IIIP (96% identity) | Hpy1124ORF5875P | |
| 5885 | 204 aa hypothetical protein | |||
| 5885 | 204 aa hypothetical protein | |||
| 5890 | M | M.HpyLIM8IX (97% identity) | TCGA | M.Hpy1124ORF5890P |
| 5895 | exodeoxyribonuclease VII large subunit | |||
| 6285 | pseudaminic acid synthase | |||
| 6290 | R | R2.HpyNCI53ORFD1P (100% identity) | R2.Hpy1124ORF6315BP | |
| 6295 | transposase | |||
| 6300 | IS607 family transposase | |||
| 6305 | R | R2.HpySW27ORF915P (11% identity) | R2.Hpy1124ORF6315AP | |
| 6310 | R | R1.HpyNCI53ORFD1P (100% identity) | R1.Hpy1124ORF6315P | |
| 6315 | M | M.HpyU101ORF870P (75% identity) | M.Hpy1124ORF6315P | |
| 6320 | elongation factor P | |||
| 6735 | alpha-1,2-fucosyltransferase | |||
| 6740 | M | M.HpyNCI53III (100% identity) | GATC | M.Hpy1124ORF6740P |
| 6745 | 326 aa hypothetical protein | |||
| 6950 | sodium/proline symporter PutP | |||
| 6955 | M | M2.HpyNCI53XP (100% identity) | CCTC | M2.Hpy1124ORF6955P |
| 6960 | M | M1.HpyNCI53X (100% identity) | CCTC | M1.Hpy1124ORF6955P |
| 6965 | agmatine deiminase | |||
| 7480 | cytochrome c1 | |||
| 7485 | R | HpyNCI53IIP (100% identity) | TGCA | Hpy1124ORF7490P |
| ??? | M | M.HpyNCI53II (100% identity) | TGCA | M.Hpy1124ORF7490P |
| 7500 | 68 aa hypothetical protein | |||
| 7670 | DNA polymerase I | |||
| 7675 | S | S2.HpyNCI53ORFEP (88% identity) | S2.Hpy1124ORF7685P | |
| 7680 | S | S1.HpyNCI53ORFEP (100% identity) | S1.Hpy1124ORF7685P | |
| 7685 | RM | HpyNCI53ORFEP (100% identity) | Hpy1124ORF7685P | |
| 7690 | ComF family protein | |||
| 7820 | restriction endonuclease | |||
| 7825 | R | HpyNCI53ORFDP (99% identity) | Hpy1124ORF7825P | |
| 7830 | outer membrane protein | |||
| 7900 | CAAX protease | |||
| 7905 | RM | HpyNCI53ORFAP (100% identity) | Hpy1124ORF7905P | |
| 7910 | 95 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 340 | type III restriction endonuclease subunit R | |||
| 345 | R | HpyNCI53ORFC1P (97% identity) | Hpy1124ORF350P | |
| 350 | M | M.HpyNCI53ORFC1P (100% identity) | M.Hpy1124ORF350P | |
| 355 | DNA/RNA non-specific endonuclease | |||
| 405 | rod shape-determining protein MreC | |||
| 410 | R | HpyNCI53ORFB1P (100% identity) | Hpy1124ORF415P | |
| ??? | M | M.HpyNCI53ORFB1P (99% identity) | M.Hpy1124ORF415P | |
| 425 | DNA-binding response regulator | |||
| 7915 | 718 aa hypothetical protein | |||
| 7920 | R | HpyNCI53ORFBP (100% identity) | Hpy1124ORF7925P | |
| 7925 | M | M.HpyNCI53ORFBP (100% identity) | M.Hpy1124ORF7925P | |
| 7930 | ATP-dependent DNA helicase RecG | |||