Helicobacter pylori C-Mx-2011-145 |
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Putative Helicobacter pylori C-Mx-2011-145 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,670,200 bp
GenBank #: CP032034
REBASE acronym: Hpy1145
Org_num: 37784
All begin D2C82_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2675 | RNA degradosome polyphosphate kinase | |||
| 2685 | S | S.HpyNCI18ORFWP (100% identity) | S.Hpy1145ORF2690P | |
| 2690 | M | M.HpyNCI18ORFWP (100% identity) | M.Hpy1145ORF2690P | |
| 2695 | R | HpyNCI18ORFWP (100% identity) | Hpy1145ORF2690P | |
| 2700 | DUF115 domain-containing protein | |||
| 4540 | 59 aa hypothetical protein | |||
| 4545 | S | S.HpyNCI18ORFOP (100% identity) | S.Hpy1145ORF4545P | |
| 4550 | CAAX protease | |||
| 4835 | hydroxyethylthiazole kinase | |||
| 4840 | R | HpyNCI18ORFNP (100% identity) | Hpy1145ORFAP | |
| 4845 | S | S.HpyNCI18ORFNP (100% identity) | S.Hpy1145ORFAP | |
| ??? | M | M.HpyNCI18ORFNP (100% identity) | M.Hpy1145ORFAP | |
| 4855 | PAP2 family protein | |||
| 7435 | M48 family peptidase | |||
| 7440 | R | HpyNCI18ORFFP (100% identity) | Hpy1145ORF7445P | |
| 7445 | M | M.HpySP317IV (96% identity) | M.Hpy1145ORF7445P | |
| 7450 | S | S.HpyNCI18ORFFP (99% identity) | S.Hpy1145ORF7445P | |
| 7455 | cag pathogenicity island protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 155 | site-specific DNA-methyltransferase | |||
| 160 | M | M.HpyNCI18ORFD1P (96% identity) | M.Hpy1145ORF160P | |
| 165 | glycosyltransferase family 8 protein | |||
| 725 | agmatine deiminase | |||
| 730 | M | M1.HpyNCI18IX (100% identity) | CCTC | M1.Hpy1145ORF730P |
| 735 | M | M2.HpyNCI18IXP (98% identity) | CCTC | M2.Hpy1145ORF730P |
| 740 | restriction endonuclease | |||
| 735 | DNA cytosine methyltransferase | |||
| 740 | R | HpyNCI18VIP (100% identity) | CCTTC | Hpy1145ORF745P |
| 745 | M | M.HpyNCI18VI (100% identity) | CCTTC | M.Hpy1145ORF745P |
| 750 | sodium/proline symporter PutP | |||
| 935 | [acyl-carrier-protein] S-malonyltransferase | |||
| 945 | R | HpyNCI18XIP (100% identity) | GATC | Hpy1145ORF950P |
| 950 | M | M.HpyNCI18XI (100% identity) | GATC | M.Hpy1145ORF950P |
| 955 | alpha-1,2-fucosyltransferase | |||
| 1370 | 0 aa hypothetical protein | |||
| 1375 | R | R1.HpyNCI18ORFF1P (100% identity) | Hpy1145ORF1375P | |
| 1380 | LlaJI family restriction endonuclease | |||
| 1800 | exodeoxyribonuclease VII large subunit | |||
| 1805 | M | M.HpyNCI18II (93% identity) | TCGA | M.Hpy1145ORF1805P |
| 1810 | 204 aa hypothetical protein | |||
| 1810 | 204 aa hypothetical protein | |||
| 1815 | R | Hpy5337ORF3630P (100% identity) | CCGG | Hpy1145ORF1820P |
| 1820 | M | M.HpyNCI26V (100% identity) | CCGG | M.Hpy1145ORF1820P |
| 1825 | AAA family ATPase | |||
| 2770 | outer membrane protein | |||
| 2775 | M | M.HpyNCI18ORFSP (100% identity) | ATTAAT | M.Hpy1145ORF2775P |
| 2780 | lipopolysaccharide heptosyltransferase family | |||
| 2785 | translational GTPase TypA | |||
| 2790 | M | M.HpySP322II (98% identity) | ACNGT | M.Hpy1145ORF2790P |
| 2795 | R | HpyNCI18IIIP (100% identity) | ACNGT | Hpy1145ORF2790P |
| 2800 | DNA cytosine methyltransferase | |||
| 2795 | GIY-YIG nuclease family protein | |||
| 2800 | M | M.HpyNCI18ORFUP (100% identity) | ACGT | M.Hpy1145ORF2800P |
| ??? | R | HpyNCI18ORFUP (73% identity) | ACGT | Hpy1145ORF2800P |
| 2810 | catalase | |||
| 2895 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyNCI18VIII (100% identity) | GTAC | M.Hpy1145ORF2900P |
| ??? | R | HpyNCI18VIIIP (100% identity) | GTAC | Hpy1145ORF2900P |
| 2910 | M23 family peptidase | |||
| 3930 | (Fe-S)-binding protein | |||
| 3935 | RM | HpyMT5105ORF3150P (86% identity) | Hpy1145ORF3935P | |
| 3940 | SIR2 family protein | |||
| 4035 | 3-5 exonuclease | |||
| 4040 | M | M.HpyNCI18ORFPP (100% identity) | CCNNGG | M.Hpy1145ORF4040P |
| 4045 | R | HpyNCI18ORFPP (100% identity) | CCNNGG | Hpy1145ORF4040P |
| 4050 | acetone carboxylase subunit gamma | |||
| 5150 | flagellar hook protein FlgE | |||
| 5155 | R | HpyNCI18XP (100% identity) | GTNNAC | Hpy1145ORF5160P |
| 5160 | M | M.HpySP409X (97% identity) | GTNNAC | M.Hpy1145ORF5160P |
| 5165 | ATP-dependent helicase | |||
| 5860 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5865 | M | M.HpyNCI18ORFLP (100% identity) | TCNNGA | M.Hpy1145ORF5865P |
| 5870 | R | HpyNCI18ORFLP (100% identity) | TCNNGA | Hpy1145ORF5865P |
| 5875 | Laminin subunit alpha-2 precursor | |||
| 6060 | 144 aa hypothetical protein | |||
| 6065 | M | M.HpyNCI18ORFKP (100% identity) | GCGC | M.Hpy1145ORF6065P |
| 6070 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6515 | HAD family hydrolase | |||
| 6520 | M | M.HpyNCI18I (93% identity) | CATG | M.Hpy1145ORF6520P |
| 6525 | IceA2 protein | |||
| 7260 | S41 family peptidase | |||
| ??? | RM | HpyNCI18ORFIP (100% identity) | Hpy1145ORF7265P | |
| 7275 | carboxylating nicotinate-nucleotide | |||
| 7325 | DNA-binding response regulator | |||
| 7330 | R | HpyU429XIIIP (100% identity) | TGCA | Hpy1145ORFBP |
| ??? | M | M.HpyNCI18V (100% identity) | TGCA | M.Hpy1145ORFBP |
| 7340 | 68 aa hypothetical protein | |||
| 7530 | 94 aa hypothetical protein | |||
| 7535 | RM | HpyNCI18ORFEP (100% identity) | Hpy1145ORF7535P | |
| 7540 | RNA-directed DNA polymerase | |||
| 7755 | ComF family protein | |||
| 7760 | RM | HpyNCI18ORFCP (100% identity) | Hpy1145ORF7760P | |
| 7765 | S | S.HpyNCI18ORFCP (100% identity) | S.Hpy1145ORF7760P | |
| 7770 | DNA polymerase I | |||
| 8045 | UDP-N-acetylmuramate dehydrogenase | |||
| 8050 | R | HpyNCI18VIIP (100% identity) | GAATTC | Hpy1145ORF8055P |
| 8055 | M | M.HpyNCI18VII (100% identity) | GAATTC | M.Hpy1145ORF8055P |
| 8060 | glycosyltransferase family 8 protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 80 | type III restriction endonuclease subunit R | |||
| 85 | R | HpyNCI18ORFE1P (100% identity) | Hpy1145ORF90P | |
| 90 | M | M.HpyNCI18ORFE1P (79% identity) | M.Hpy1145ORF90P | |
| 95 | DNA/RNA non-specific endonuclease | |||
| 145 | rod shape-determining protein MreC | |||
| 150 | R | HpyNCI18ORFC1P (100% identity) | Hpy1145ORF155P | |
| 155 | M | M.HpyNCI18ORFC1P (100% identity) | M.Hpy1145ORF155P | |
| 160 | DUF1887 family protein | |||
| 7510 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyNCI18ORFDP (100% identity) | GWCAY | M.Hpy1145ORF7515P |
| 7525 | R | HpyNCI18ORFDP (100% identity) | GWCAY | Hpy1145ORF7515P |
| 7530 | 94 aa hypothetical protein | |||