Helicobacter pylori C-Mx-2011-171 |
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Putative Helicobacter pylori C-Mx-2011-171 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,645,502 bp
GenBank #: CP032033
REBASE acronym: Hpy1171
Org_num: 37786
All begin D2C83_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2555 | M48 family peptidase | |||
| 2560 | R | HpyNCI57XIIP (100% identity) | Hpy1171ORF2565P | |
| 2565 | M | M.HpyNCI57XII (100% identity) | M.Hpy1171ORF2565P | |
| 2570 | S | S.HpyNCI57XII (100% identity) | S.Hpy1171ORF2565P | |
| 2575 | cag pathogenicity island protein | |||
| 5840 | RNA degradosome polyphosphate kinase | |||
| 5850 | S | S.HpyNCI57ORFIP (100% identity) | S.Hpy1171ORF5855P | |
| 5855 | M | M.HpyNCI57ORFIP (100% identity) | M.Hpy1171ORF5855P | |
| 5860 | R | HpyNCI57ORFIP (100% identity) | Hpy1171ORF5855P | |
| 5865 | DUF115 domain-containing protein | |||
| 7505 | outer membrane beta-barrel protein HofF | |||
| 7510 | S | S.HpyNCI57ORFCP (100% identity) | S.Hpy1171ORF7510P | |
| 7515 | cadmium-translocating P-type ATPase | |||
| 7795 | hydroxyethylthiazole kinase | |||
| 7800 | R | HpyNCI57ORFAP (100% identity) | Hpy1171ORF7810P | |
| 7805 | S | S.HpyNCI57ORFAP (100% identity) | S.Hpy1171ORF7810P | |
| 7810 | M | M.HpyNCI57ORFAP (100% identity) | M.Hpy1171ORF7810P | |
| 7815 | DNA cytosine methyltransferase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 130 | flagellar hook protein FlgE | |||
| 135 | R | HpyNCI57VIIIP (100% identity) | GTNNAC | Hpy1171ORF140P |
| 140 | M | M.Hpy20105ORF7740P (99% identity) | GTNNAC | M.Hpy1171ORF140P |
| 145 | ATP-dependent helicase | |||
| 945 | acetyl-CoA carboxylase biotin carboxylase | |||
| 950 | M | M.HpyNCI57ORFB1P (100% identity) | TCNNGA | M.Hpy1171ORF950P |
| 955 | R | HpyNCI57ORFB1P (100% identity) | TCNNGA | Hpy1171ORF950P |
| 960 | Laminin subunit alpha-2 precursor | |||
| 1150 | 144 aa hypothetical protein | |||
| 1155 | R | HpyNCI57ORFA1P (100% identity) | GCGC | Hpy1171ORF1160P |
| 1160 | M | M.HpyNCI57ORFA1P (100% identity) | GCGC | M.Hpy1171ORF1160P |
| 1165 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1635 | HAD family hydrolase | |||
| 1640 | M | M.HpyU418I (100% identity) | CATG | M.Hpy1171ORF1640P |
| 1645 | IceA2 protein | |||
| 2380 | S41 family peptidase | |||
| ??? | R | HpyNCI57ORFXP (100% identity) | Hpy1171ORF2395P | |
| 2395 | M | M.HpyU404VI (40% identity) | M.Hpy1171ORF2395P | |
| 2400 | DNA methyltransferase | |||
| 2395 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyNCI57ORFYP (92% identity) | Hpy1171ORF2400P | |
| 2405 | carboxylating nicotinate-nucleotide | |||
| 2460 | anthranilate synthase component I | |||
| 2465 | R | HpyNCI57IVP (100% identity) | TGCA | Hpy1171ORF2470P |
| ??? | M | M.HpyNCI57IV (100% identity) | TGCA | M.Hpy1171ORF2470P |
| 2480 | 68 aa hypothetical protein | |||
| 2650 | 666 aa hypothetical protein | |||
| 2655 | RM | HpyNCI57ORFUP (95% identity) | Hpy1171ORF2655P | |
| 2660 | CAAX protease | |||
| 2730 | outer membrane protein | |||
| 2735 | R | HpyNCI57ORFSP (100% identity) | Hpy1171ORF2735P | |
| 2740 | restriction endonuclease | |||
| 2870 | ComF family protein | |||
| 2875 | RM | HpyNCI57ORFRP (100% identity) | Hpy1171ORF2875P | |
| 2880 | S | S1.HpyNCI57ORFRP (100% identity) | S1.Hpy1171ORF2875P | |
| 2885 | S | S2.HpyNCI57ORFRP (84% identity) | S2.Hpy1171ORF2875P | |
| 2890 | DNA polymerase I | |||
| 3330 | response regulator | |||
| 3335 | M | M2.HpyJO4VII (98% identity) | GAAGA | M1.Hpy1171ORF3335P |
| 3340 | M | M.HpyNCI57II (74% identity) | GAAGA | M2.Hpy1171ORF3335P |
| 3345 | R | HpyNCI57IIP (100% identity) | GAAGA | Hpy1171ORF3335P |
| 3350 | DNA-binding response regulator | |||
| 3900 | agmatine deiminase | |||
| 3905 | M | M1.HpyNCI57V (100% identity) | CCTC | M1.Hpy1171ORF3905P |
| 3910 | M | M2.HpyNCI57VP (94% identity) | M2.Hpy1171ORF3905P | |
| 3915 | 60 aa hypothetical protein | |||
| 3910 | DNA cytosine methyltransferase | |||
| 3920 | M | M.HpyNCI57VII (100% identity) | GTSAC | M.Hpy1171ORF3920P |
| 3925 | R | HpyNCI57VIIP (88% identity) | GTSAC | Hpy1171ORF3920P |
| 3930 | type II restriction endonuclease | |||
| 4145 | 325 aa hypothetical protein | |||
| 4150 | M | M.HpyNCI57III (100% identity) | GATC | M.Hpy1171ORF4150P |
| 4155 | alpha-1,2-fucosyltransferase | |||
| 4965 | exodeoxyribonuclease VII large subunit | |||
| 4970 | M | M.HpyNCI57VI (93% identity) | TCGA | M.Hpy1171ORF4970P |
| 4975 | 132 aa hypothetical protein | |||
| 4975 | 132 aa hypothetical protein | |||
| ??? | R | HpyNCI57XP (96% identity) | CCGG | Hpy1171ORF4985P |
| 4985 | M | M.HpyNCI57X (100% identity) | CCGG | M.Hpy1171ORF4985P |
| 4990 | AAA family ATPase | |||
| 5940 | outer membrane beta-barrel protein | |||
| 5945 | M | M.HpyNCI57ORFGP (100% identity) | ATTAAT | M.Hpy1171ORF5945P |
| 5950 | lipopolysaccharide heptosyltransferase family | |||
| 5955 | translational GTPase TypA | |||
| 5960 | M | M.HpyPR04ORF2210P (98% identity) | ACGT | M.Hpy1171ORF5960P |
| ??? | R | HpyNCI57ORFHP (73% identity) | ACGT | Hpy1171ORF5960P |
| 5970 | catalase | |||
| 6060 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyNCI57IX (100% identity) | GTAC | M.Hpy1171ORF6065P |
| ??? | R | HpyNCI57IXP (100% identity) | GTAC | Hpy1171ORF6065P |
| 6075 | M23 family peptidase | |||
| 6905 | (Fe-S)-binding protein | |||
| 6910 | RM | HpyH014ORF3265P (89% identity) | Hpy1171ORF6910P | |
| 6915 | 453 aa hypothetical protein | |||
| 6990 | 3-5 exonuclease | |||
| ??? | M | M.HpyNCI57ORFDP (100% identity) | M.Hpy1171ORFAP | |
| 7000 | R | HpyNCI57ORFDP (100% identity) | CCNNGG | Hpy1171ORFAP |
| 7005 | acetone carboxylase subunit gamma | |||
| 7810 | type I restriction-modification system subunit | |||
| 7815 | M | M.HpySWT03ORF2445P (100% identity) | M.Hpy1171ORF7815P | |
| 7820 | HaeIII family restriction endonuclease | |||
| 7815 | DNA cytosine methyltransferase | |||
| 7820 | R | HpyNCI57ORFBP (100% identity) | Hpy1171ORF7820P | |
| 7825 | PAP2 family protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2630 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyNCI57ORFTP (100% identity) | M.Hpy1171ORF2635P | |
| 2645 | R | HpyNCI57ORFTP (100% identity) | Hpy1171ORF2635P | |
| 2650 | 666 aa hypothetical protein | |||
| 3250 | biotin synthase | |||
| 3255 | R | HpyNCI57ORFQP (99% identity) | Hpy1171ORF3260P | |
| 3260 | M | M.HpyNCI57ORFQP (100% identity) | M.Hpy1171ORF3260P | |
| 3265 | DNA/RNA non-specific endonuclease | |||
| 3315 | rod shape-determining protein MreC | |||
| 3320 | R | HpyNCI57XIP (100% identity) | Hpy1171ORF3325P | |
| 3325 | M | M.HpyNCI57XI (100% identity) | M.Hpy1171ORF3325P | |
| 3330 | response regulator | |||