Helicobacter pylori C-Mx-2008-31 |
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Putative Helicobacter pylori C-Mx-2008-31 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,634,738 bp
GenBank #: CP032031
REBASE acronym: Hpy200831
Org_num: 37778
All begin D2C84_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1810 | RNA degradosome polyphosphate kinase | |||
| 1820 | S | S.HpyNCI56ORFFP (100% identity) | CCANNNNNNTTT | S.Hpy200831ORF1825P |
| 1825 | M | M.HpyNCI56ORFFP (100% identity) | CCANNNNNNTTT | M.Hpy200831ORF1825P |
| 1830 | R | HpyNCI56ORFFP (100% identity) | CCANNNNNNTTT | Hpy200831ORF1825P |
| 1835 | DUF115 domain-containing protein | |||
| 3625 | outer membrane beta-barrel protein HofF | |||
| 3630 | S | S.HpyNCI56ORFMP (100% identity) | S.Hpy200831ORF3630P | |
| 3635 | cadmium-translocating P-type ATPase | |||
| 3930 | hydroxyethylthiazole kinase | |||
| 3935 | R | HpyNCI56ORFPP (100% identity) | Hpy200831ORFAP | |
| 3940 | S | S.HpyNCI56ORFPP (100% identity) | S.Hpy200831ORFAP | |
| ??? | M | M.HpyNCI38ORFF1P (100% identity) | M.Hpy200831ORFAP | |
| 3950 | PAP2 family protein | |||
| 6705 | nickel transporter | |||
| 6710 | S | S.HpyNCI56ORFZP (100% identity) | S.Hpy200831ORF6710P | |
| 6715 | formyltetrahydrofolate deformylase | |||
| 7240 | 303 aa hypothetical protein | |||
| 7245 | S | S.HpyNCI56ORFF1P (100% identity) | S.Hpy200831ORF7250P | |
| 7250 | M | M.HpyNCI56ORFF1P (100% identity) | M.Hpy200831ORF7250P | |
| 7255 | R | HpyNCI56ORFF1P (100% identity) | Hpy200831ORF7250P | |
| 7260 | M48 family peptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | [acyl-carrier-protein] S-malonyltransferase | |||
| 65 | R | HpyNCI56XIIP (100% identity) | GATC | Hpy200831ORF70P |
| 70 | M | M.HpyNCI56XII (100% identity) | GATC | M.Hpy200831ORF70P |
| 75 | alpha-1,2-fucosyltransferase | |||
| 490 | elongation factor P | |||
| 495 | M | M.HpyNCI56ORFCP (100% identity) | M.Hpy200831ORF495P | |
| 500 | 256 aa hypothetical protein | |||
| 505 | R | R1.HpyNCI56ORFCP (100% identity) | R1.Hpy200831ORF495P | |
| 510 | R | R2.HpyNCI56ORFCP (100% identity) | R2.Hpy200831ORF495P | |
| 515 | pseudaminic acid synthase | |||
| 910 | exodeoxyribonuclease VII large subunit | |||
| 915 | M | M.Hpy1152ORF6750P (100% identity) | TCGA | M.Hpy200831ORF915P |
| 920 | 69 aa hypothetical protein | |||
| 920 | 69 aa hypothetical protein | |||
| 925 | R | Hpy1152ORF6735P (100% identity) | CCGG | Hpy200831ORF930P |
| 930 | M | M.HpyU416IV (100% identity) | CCGG | M.Hpy200831ORF930P |
| 935 | AAA family ATPase | |||
| 1905 | outer membrane beta-barrel protein | |||
| 1910 | M | M.HpyNCI56XI (100% identity) | ATTAAT | M.Hpy200831ORF1910P |
| 1915 | lipopolysaccharide heptosyltransferase family | |||
| 1920 | translational GTPase TypA | |||
| 1925 | M | M.HpyNCI56ORFGP (100% identity) | ACNGT | M.Hpy200831ORF1925P |
| 1930 | R | Hpy200831ORF2070P (100% identity) | ACNGT | Hpy200831ORF1925P |
| 1935 | DNA (cytosine-5-)-methyltransferase | |||
| 2065 | integrase | |||
| 2070 | M | M.HpyNCI56ORFGP (57% identity) | M.Hpy200831ORF2070P | |
| 2075 | R | Hpy200831ORF1925P (100% identity) | Hpy200831ORF2070P | |
| 2080 | DNA cytosine methyltransferase | |||
| 2075 | GIY-YIG nuclease family protein | |||
| 2080 | M | M.HpyME03ORF2635P (100% identity) | M.Hpy200831ORF2080P | |
| 2085 | catalase | |||
| 2175 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.Hpy1152ORF5485P (100% identity) | GTAC | M.Hpy200831ORF2180P |
| ??? | R | HpyNCI56VIP (100% identity) | GTAC | Hpy200831ORF2180P |
| 2190 | M23 family peptidase | |||
| 3030 | (Fe-S)-binding protein | |||
| 3035 | RM | HpyNCI56ORFLP (100% identity) | Hpy200831ORF3035P | |
| 3040 | outer membrane protein | |||
| 3775 | osmoprotection binding protein | |||
| 3780 | R | HpySP507IVP (100% identity) | CGWCG | Hpy200831ORF3785P |
| 3785 | M | M.Hpyfe21ORF4730P (100% identity) | CGWCG | M.Hpy200831ORF3785P |
| 3790 | ABC transporter permease subunit | |||
| 4235 | flagellar hook protein FlgE | |||
| 4240 | R | HpyNCI56VP (100% identity) | GTNNAC | Hpy200831ORF4245P |
| 4245 | M | M.Hpy1152ORF3415P (100% identity) | GTNNAC | M.Hpy200831ORF4245P |
| 4250 | ATP-dependent helicase | |||
| 4935 | acetyl-CoA carboxylase biotin carboxylase | |||
| 4940 | M | M.HpyNCI56ORFRP (100% identity) | TCNNGA | M.Hpy200831ORF4940P |
| 4945 | R | HpyNCI56ORFRP (100% identity) | TCNNGA | Hpy200831ORF4940P |
| 4950 | Laminin subunit alpha-2 precursor | |||
| 5150 | 144 aa hypothetical protein | |||
| 5155 | M | M.Hpy1152ORF2505P (100% identity) | M.Hpy200831ORF5155P | |
| 5160 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5630 | HAD family hydrolase | |||
| 5635 | M | M.HpyNCI56I (93% identity) | CATG | M.Hpy200831ORF5635P |
| 5640 | IceA2 protein | |||
| 6380 | PDZ domain-containing protein | |||
| 6385 | R | HpyNCI56IVP (100% identity) | GANTC | Hpy200831ORF6390P |
| 6390 | M | M.HpyNCI56IV (100% identity) | GANTC | M.Hpy200831ORF6390P |
| 6395 | DNA methyltransferase | |||
| 6390 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyNCI56ORFUP (100% identity) | Hpy200831ORF6395P | |
| 6405 | carboxylating nicotinate-nucleotide | |||
| 6455 | DNA-binding response regulator | |||
| 6460 | R | HpyNCI56ORFXP (100% identity) | GAAGA | Hpy200831ORF6465P |
| 6465 | M | M2.Hpy1152ORF1195P (100% identity) | GAAGA | M1.Hpy200831ORF6465P |
| 6470 | M | M1.Hpy1152ORF1195P (100% identity) | GAAGA | M2.Hpy200831ORF6465P |
| 6475 | response regulator | |||
| 6895 | DEAD/DEAH box helicase | |||
| 6900 | RM | HpyNCI56ORFA1P (96% identity) | Hpy200831ORF6900P | |
| 6905 | CAAX protease | |||
| 6975 | outer membrane protein | |||
| 6980 | R | HpyNCI56XP (100% identity) | CCATC | Hpy200831ORF6985P |
| ??? | M | M2.HpyNCI56X (100% identity) | CCATC | M1.Hpy200831ORF6985P |
| ??? | M | M1.Hpy1152ORF675P (100% identity) | CCATC | M2.Hpy200831ORF6985P |
| 6995 | YjgP/YjgQ family permease | |||
| 7120 | ComF family protein | |||
| 7125 | RM | HpyNCI56ORFD1P (100% identity) | CYANNNNNGTA | Hpy200831ORF7125P |
| 7130 | S | S.Hpyfe89ORF275P (97% identity) | S.Hpy200831ORF7125P | |
| 7135 | DNA polymerase I | |||
| 7185 | addiction module antidote protein | |||
| 7190 | M | M2.HpyNCI56ORFE1P (100% identity) | M.Hpy200831ORF7190P | |
| 7195 | DNA (cytosine-5-)-methyltransferase | |||
| 7190 | DNA (cytosine-5-)-methyltransferase | |||
| 7195 | M | M1.HpyNCI56ORFE1P (100% identity) | M.Hpy200831ORF7195P | |
| 7200 | R | HpyNCI56ORFE1P (100% identity) | Hpy200831ORF7195P | |
| 7205 | cytochrome-c peroxidase | |||
| 7325 | 68 aa hypothetical protein | |||
| ??? | M | M.HpyNCI56II (100% identity) | TGCA | M.Hpy200831ORFBP |
| 7335 | R | HpyNCI56IIP (100% identity) | TGCA | Hpy200831ORFBP |
| 7340 | cytochrome c1 | |||
| 7430 | 366 aa hypothetical protein | |||
| 7435 | M | M.HpySP104ORF7575P (100% identity) | M.Hpy200831ORF7435P | |
| 7440 | DUF1887 domain-containing protein | |||
| 7875 | agmatine deiminase | |||
| 7880 | M | M1.HpyNCI56VII (100% identity) | CCTC | M1.Hpy200831ORF7880P |
| 7885 | M | M2.HpyNCI56VIIP (100% identity) | CCTC | M2.Hpy200831ORF7880P |
| 7890 | R | Hpy1152ORF7815P (100% identity) | CCTC | Hpy200831ORF7880P |
| 7895 | sodium/proline symporter PutP | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6475 | response regulator | |||
| 6480 | M | M.HpyNCI56ORFWP (99% identity) | M.Hpy200831ORF6480P | |
| 6485 | R | HpyNCI56ORFWP (100% identity) | Hpy200831ORF6480P | |
| 6490 | rod shape-determining protein MreC | |||
| 6540 | DNA/RNA non-specific endonuclease | |||
| 6545 | M | M.HpyNCI56ORFYP (100% identity) | M.Hpy200831ORF6545P | |
| 6550 | R | Hpy1152ORF1120P (100% identity) | Hpy200831ORF6545P | |
| 6555 | biotin synthase | |||
| 6885 | ATP-dependent DNA helicase RecG | |||
| 6890 | M | M.HpyNCI56ORFB1P (100% identity) | M.Hpy200831ORF6890P | |
| 6895 | R | HpyNCI56ORFB1P (100% identity) | Hpy200831ORF6890P | |
| 6900 | class I SAM-dependent DNA methyltransferase | |||