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Putative Helicobacter pylori C-Mx-2010-8 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,682,275 bp
GenBank #: CP032027
REBASE acronym: Hpy20108
Org_num: 37782
All begin D2C85_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
1735 | cagY like domain protein | |||
1740 | S | S.HpyNCI40ORFYP (100% identity) | S.Hpy20108ORF1745P | |
1745 | M | M.HpyNCI40ORFYP (100% identity) | M.Hpy20108ORF1745P | |
1750 | R | HpyNCI40ORFYP (100% identity) | Hpy20108ORF1745P | |
1755 | M48 family peptidase | |||
4370 | RNA degradosome polyphosphate kinase | |||
4380 | S | S.HpyNCI40ORFPP (100% identity) | S.Hpy20108ORF4385P | |
4385 | M | M.HpyNCI40ORFPP (100% identity) | M.Hpy20108ORF4385P | |
4390 | R | HpyNCI40ORFPP (100% identity) | Hpy20108ORF4385P | |
4395 | DUF115 domain-containing protein | |||
6225 | outer membrane beta-barrel protein HofF | |||
6230 | S | S.HpyNCI40ORFIP (100% identity) | S.Hpy20108ORF6240P | |
6235 | CAAX protease | |||
6240 | M | M.HpyNCI40ORFIP (100% identity) | M.Hpy20108ORF6240P | |
6245 | cadmium-translocating P-type ATPase | |||
6520 | hydroxyethylthiazole kinase | |||
6525 | R | HpyNCI40ORFGP (100% identity) | Hpy20108ORF6530P | |
6530 | M | M.HpyNCI40ORFGP (100% identity) | M.Hpy20108ORF6530P | |
6535 | restriction endonuclease subunit M | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
900 | S41 family peptidase | |||
??? | R | HpyNCI40IVP (100% identity) | GANTC | Hpy20108ORF915P |
915 | M | M.HpyNCI40IV (100% identity) | GANTC | M.Hpy20108ORF915P |
920 | DNA methyltransferase | |||
915 | site-specific DNA-methyltransferase | |||
??? | RM | HpyNCI40ORFG1P (100% identity) | Hpy20108ORF920P | |
925 | carboxylating nicotinate-nucleotide | |||
975 | DNA-binding response regulator | |||
980 | R | HpyNCI40IIP (100% identity) | GAAGA | Hpy20108ORF985P |
985 | M | M1.HpyNCI40II (100% identity) | GAAGA | M1.Hpy20108ORF985P |
990 | M | M2.Hpyfe78ORF7125P (100% identity) | GAAGA | M2.Hpy20108ORF985P |
995 | site-specific DNA-methyltransferase | |||
1435 | DNA polymerase I | |||
1440 | S | S.HpyNCI40XI (100% identity) | S.Hpy20108ORF1445P | |
1445 | RM | HpyNCI40XI (100% identity) | Hpy20108ORF1445P | |
1450 | ComF family protein | |||
1655 | CAAX protease | |||
1660 | RM | HpyNCI40ORFZP (100% identity) | Hpy20108ORF1660P | |
1665 | DEAD/DEAH box helicase | |||
1830 | 68 aa hypothetical protein | |||
??? | M | M.HpyNCI40ORFXP (100% identity) | TGCA | M.Hpy20108ORF1840P |
??? | R | HpyNCI40ORFXP (100% identity) | TGCA | Hpy20108ORF1840P |
1850 | elongation factor Ts | |||
2405 | agmatine deiminase | |||
2410 | M | M1.HpyNCI40VI (100% identity) | CCTC | M1.Hpy20108ORF2410P |
2415 | M | M2.HpyNCI40VIP (100% identity) | CCTC | M2.Hpy20108ORF2410P |
2420 | sodium/proline symporter PutP | |||
2605 | [acyl-carrier-protein] S-malonyltransferase | |||
2615 | R | HpyU302VIIP (100% identity) | GATC | Hpy20108ORF2620P |
2620 | M | M.HpyNCI40X (100% identity) | GATC | M.Hpy20108ORF2620P |
2625 | alpha-1,2-fucosyltransferase | |||
2680 | HNH endonuclease | |||
2685 | M | M.HpyPOR114ORF505P (100% identity) | M.Hpy20108ORF2685P | |
2690 | HAMP domain-containing protein | |||
3045 | elongation factor P | |||
3050 | M | M2.HpyIS2ORF860P (26% identity) | M.Hpy20108ORF3050P | |
3055 | R | HpyNCI40McrBP (100% identity) | R1.Hpy20108ORF3050P | |
3060 | R | HpyNCI40ORFSP (100% identity) | R2.Hpy20108ORF3050P | |
3065 | pseudaminic acid synthase | |||
3475 | exodeoxyribonuclease VII large subunit | |||
3480 | M | M.HpySP301VIII (98% identity) | TCGA | M.Hpy20108ORF3480P |
3485 | 69 aa hypothetical protein | |||
3485 | 69 aa hypothetical protein | |||
3490 | R | HpyU302ORF4735P (100% identity) | Hpy20108ORF3505P | |
3495 | 50 aa hypothetical protein | |||
3500 | transposase | |||
??? | M | M.HpyF017III (99% identity) | CCGG | M.Hpy20108ORF3505P |
3510 | AAA family ATPase | |||
4465 | outer membrane protein | |||
??? | M | M.HpyNCI40ORFMP (97% identity) | M.Hpy20108ORF4470P | |
4475 | lipopolysaccharide heptosyltransferase family | |||
4480 | translational GTPase TypA | |||
4485 | M | M.HpyNY40ORF1087P (100% identity) | ACNGT | M.Hpy20108ORF4485P |
4490 | R | HpySP312IIP (100% identity) | ACNGT | Hpy20108ORF4485P |
4495 | DNA cytosine methyltransferase | |||
4490 | GIY-YIG nuclease family protein | |||
4495 | M | M.HpyNCI40ORFOP (100% identity) | ACGT | M.Hpy20108ORF4495P |
??? | R | HpyNCI40ORFOP (89% identity) | ACGT | Hpy20108ORF4495P |
4505 | catalase | |||
4600 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
??? | M | M.HpyNCI40ORFLP (99% identity) | GTAC | M.Hpy20108ORF4605P |
4610 | R | HpySP309ORF3875P (100% identity) | GTAC | Hpy20108ORF4605P |
4615 | M23 family peptidase | |||
5440 | (Fe-S)-binding protein | |||
5445 | RM | HpyNCI40ORFKP (90% identity) | Hpy20108ORF5445P | |
5450 | 142 aa hypothetical protein | |||
5550 | 3-5 exonuclease | |||
5555 | M | M.HpyPOR114IV (100% identity) | CCNNGG | M.Hpy20108ORF5555P |
5560 | R | HpyU420IVP (99% identity) | CCNNGG | Hpy20108ORF5555P |
5565 | acetone carboxylase subunit gamma | |||
6830 | flagellar hook protein FlgE | |||
6835 | R | HpyNCI40VP (100% identity) | GTNNAC | Hpy20108ORF6840P |
6840 | M | M.HpyB38ORF894P (98% identity) | GTNNAC | M.Hpy20108ORF6840P |
6845 | ATP-dependent helicase | |||
7550 | acetyl-CoA carboxylase biotin carboxylase | |||
7555 | M | M.HpyNCI40VII (100% identity) | TCNNGA | M.Hpy20108ORF7555P |
7560 | R | HpyNCI40VIIP (100% identity) | TCNNGA | Hpy20108ORF7555P |
7565 | Laminin subunit alpha-2 precursor | |||
7750 | 144 aa hypothetical protein | |||
7755 | M | M.HpyOK317ORFDP (100% identity) | GCGC | M.Hpy20108ORF7755P |
7760 | flagellar biosynthesis anti-sigma factor FlgM | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
990 | site-specific DNA-methyltransferase | |||
995 | M | M.HpyNCI40ORFE1P (99% identity) | M.Hpy20108ORF995P | |
1000 | R | HpyNCI40ORFE1P (100% identity) | Hpy20108ORF995P | |
1005 | rod shape-determining protein MreC | |||
1060 | DNA/RNA non-specific endonuclease | |||
1065 | M | M.HpyNCI40ORFC1P (100% identity) | M.Hpy20108ORF1065P | |
1070 | R | HpyNCI40ORFC1P (97% identity) | Hpy20108ORF1065P | |
1075 | biotin synthase | |||
1660 | class I SAM-dependent DNA methyltransferase | |||
1665 | R | HpyNCI40ORFA1P (100% identity) | GWCAY | Hpy20108ORF1670P |
1670 | M | M.HpyNCI40ORFA1P (100% identity) | GWCAY | M.Hpy20108ORF1670P |
1675 | ATP-dependent DNA helicase RecG |