Helicobacter pylori C-Mx-2011-152 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori C-Mx-2011-152 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,632,617 bp
GenBank #: CP032025
REBASE acronym: Hpy1152
Org_num: 37785
All begin D2C86_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 405 | M48 family peptidase | |||
| 410 | R | HpyNCI56ORFF1P (100% identity) | Hpy1152ORF415P | |
| 415 | M | M.HpyNCI56ORFF1P (100% identity) | M.Hpy1152ORF415P | |
| 420 | S | S.HpyNCI56ORFF1P (100% identity) | S.Hpy1152ORF415P | |
| 425 | 303 aa hypothetical protein | |||
| 950 | formyltetrahydrofolate deformylase | |||
| 955 | S | S.HpyNCI56ORFZP (100% identity) | S.Hpy1152ORF955P | |
| 960 | nickel transporter | |||
| 3710 | PAP2 family protein | |||
| 3715 | M | M.HpyNCI56ORFPP (95% identity) | M.Hpy1152ORF3715P | |
| 3720 | S | S.HpyNCI56ORFPP (100% identity) | S.Hpy1152ORF3715P | |
| 3725 | R | HpyNCI56ORFPP (100% identity) | Hpy1152ORF3715P | |
| 3730 | hydroxyethylthiazole kinase | |||
| 4030 | cadmium-translocating P-type ATPase | |||
| 4035 | S | S.HpyNCI56ORFMP (100% identity) | S.Hpy1152ORF4035P | |
| 4040 | outer membrane beta-barrel protein HofF | |||
| 5830 | DUF115 domain-containing protein | |||
| 5835 | R | HpyNCI56ORFFP (100% identity) | CCANNNNNNTTT | Hpy1152ORF5840P |
| 5840 | M | M.HpyNCI56ORFFP (100% identity) | CCANNNNNNTTT | M.Hpy1152ORF5840P |
| 5845 | S | S.HpyNCI56ORFFP (100% identity) | CCANNNNNNTTT | S.Hpy1152ORF5840P |
| 5855 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 225 | DUF1887 domain-containing protein | |||
| 230 | M | M.HpySP104ORF7575P (100% identity) | M.Hpy1152ORF230P | |
| 235 | 366 aa hypothetical protein | |||
| 325 | cytochrome c1 | |||
| 330 | R | HpyNCI56IIP (100% identity) | TGCA | Hpy1152ORFAP |
| ??? | M | M.HpyNCI56II (100% identity) | TGCA | M.Hpy1152ORFAP |
| 340 | 68 aa hypothetical protein | |||
| 460 | cytochrome-c peroxidase | |||
| 465 | R | HpyNCI56ORFE1P (100% identity) | Hpy1152ORF470P | |
| 470 | M | M1.HpyNCI56ORFE1P (100% identity) | M1.Hpy1152ORF470P | |
| 475 | M | M2.HpyNCI56ORFE1P (100% identity) | M2.Hpy1152ORF470P | |
| 480 | addiction module antidote protein | |||
| 530 | DNA polymerase I | |||
| 535 | S | S.HpyNCI56ORFD1P (100% identity) | S.Hpy1152ORF540P | |
| 540 | RM | HpyNCI56ORFD1P (100% identity) | Hpy1152ORF540P | |
| 545 | ComF family protein | |||
| 670 | YjgP/YjgQ family permease | |||
| ??? | M | M2.Hpy200831ORF6985P (100% identity) | CCATC | M1.Hpy1152ORF675P |
| ??? | M | M2.HpyNCI56X (100% identity) | CCATC | M2.Hpy1152ORF675P |
| 685 | R | HpyNCI56XP (100% identity) | CCATC | Hpy1152ORF675P |
| 690 | outer membrane protein | |||
| 760 | CAAX protease | |||
| ??? | RM | HpyNCI56ORFA1P (100% identity) | Hpy1152ORF765P | |
| 770 | DEAD/DEAH box helicase | |||
| 1190 | response regulator | |||
| 1195 | M | M2.Hpy200831ORF6465P (100% identity) | GAAGA | M1.Hpy1152ORF1195P |
| 1200 | M | M1.Hpy200831ORF6465P (100% identity) | GAAGA | M2.Hpy1152ORF1195P |
| 1205 | R | HpyNCI56ORFXP (100% identity) | GAAGA | Hpy1152ORF1195P |
| 1210 | DNA-binding response regulator | |||
| 1260 | carboxylating nicotinate-nucleotide | |||
| 1265 | RM | HpyNCI56ORFUP (100% identity) | Hpy1152ORF1265P | |
| 1270 | site-specific DNA-methyltransferase | |||
| 1265 | DNA methyltransferase | |||
| 1270 | M | M.HpyNCI56IV (100% identity) | GANTC | M.Hpy1152ORF1270P |
| 1275 | R | HpyNCI56IVP (100% identity) | GANTC | Hpy1152ORF1270P |
| 1280 | PDZ domain-containing protein | |||
| 2020 | IceA2 protein | |||
| 2025 | M | M.HpyNCI56I (93% identity) | CATG | M.Hpy1152ORF2025P |
| 2030 | HAD family hydrolase | |||
| 2500 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2505 | M | M.Hpy200831ORF5155P (100% identity) | M.Hpy1152ORF2505P | |
| 2510 | 144 aa hypothetical protein | |||
| 2710 | Laminin subunit alpha-2 precursor | |||
| 2715 | R | HpyNCI56ORFRP (100% identity) | TCNNGA | Hpy1152ORF2720P |
| 2720 | M | M.HpyNCI56ORFRP (100% identity) | TCNNGA | M.Hpy1152ORF2720P |
| 2725 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3410 | ATP-dependent helicase | |||
| 3415 | M | M.Hpy200831ORF4245P (100% identity) | GTNNAC | M.Hpy1152ORF3415P |
| 3420 | R | HpyNCI56VP (100% identity) | GTNNAC | Hpy1152ORF3415P |
| 3425 | flagellar hook protein FlgE | |||
| 3875 | ABC transporter permease subunit | |||
| 3880 | M | M.Hpyfe21ORF4730P (100% identity) | CGWCG | M.Hpy1152ORF3880P |
| 3885 | R | HpySP507IVP (100% identity) | CGWCG | Hpy1152ORF3880P |
| 3890 | osmoprotection binding protein | |||
| 4625 | outer membrane protein | |||
| 4630 | RM | HpyNCI56ORFLP (100% identity) | Hpy1152ORF4630P | |
| 4635 | (Fe-S)-binding protein | |||
| 5475 | M23 family peptidase | |||
| ??? | R | HpyNCI56VIP (100% identity) | GTAC | Hpy1152ORF5485P |
| ??? | M | M.Hpy200831ORF2180P (100% identity) | GTAC | M.Hpy1152ORF5485P |
| 5490 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 5580 | catalase | |||
| 5585 | M | M.HpyME03ORF2635P (100% identity) | M.Hpy1152ORF5585P | |
| 5590 | GIY-YIG nuclease family protein | |||
| 5585 | DNA cytosine methyltransferase | |||
| 5590 | R | Hpy200831ORF2070P (100% identity) | Hpy1152ORF5595P | |
| 5595 | M | M.HpyNCI56ORFGP (57% identity) | M.Hpy1152ORF5595P | |
| 5600 | integrase | |||
| 5730 | DNA (cytosine-5-)-methyltransferase | |||
| 5735 | R | Hpy200831ORF2070P (100% identity) | ACNGT | Hpy1152ORF5740P |
| 5740 | M | M.HpyNCI56ORFGP (100% identity) | ACNGT | M.Hpy1152ORF5740P |
| 5745 | translational GTPase TypA | |||
| 5750 | lipopolysaccharide heptosyltransferase family | |||
| 5755 | M | M.HpyNCI56XI (100% identity) | ATTAAT | M.Hpy1152ORF5755P |
| 5760 | outer membrane beta-barrel protein | |||
| 6730 | AAA family ATPase | |||
| 6735 | M | M.HpyU416IV (100% identity) | CCGG | M.Hpy1152ORF6735P |
| 6740 | R | Hpy200831ORF930P (100% identity) | CCGG | Hpy1152ORF6735P |
| 6745 | 69 aa hypothetical protein | |||
| 6745 | 69 aa hypothetical protein | |||
| 6750 | M | M.Hpy200831ORF915P (100% identity) | TCGA | M.Hpy1152ORF6750P |
| 6755 | exodeoxyribonuclease VII large subunit | |||
| 7150 | pseudaminic acid synthase | |||
| 7155 | R | R2.HpyNCI56ORFCP (100% identity) | R1.Hpy1152ORF7170P | |
| 7160 | R | R1.HpyNCI56ORFCP (100% identity) | R2.Hpy1152ORF7170P | |
| 7165 | 238 aa hypothetical protein | |||
| 7170 | M | M.HpyNCI56ORFCP (100% identity) | M.Hpy1152ORF7170P | |
| 7175 | elongation factor P | |||
| 7585 | alpha-1,2-fucosyltransferase | |||
| 7590 | M | M.HpyNCI56XII (100% identity) | GATC | M.Hpy1152ORF7590P |
| 7595 | R | HpyNCI56XIIP (100% identity) | GATC | Hpy1152ORF7590P |
| 7605 | [acyl-carrier-protein] S-malonyltransferase | |||
| 7805 | sodium/proline symporter PutP | |||
| 7810 | R | Hpy200831ORF7880P (100% identity) | CCTC | Hpy1152ORF7815P |
| 7815 | M | M2.HpyNCI56VIIP (100% identity) | CCTC | M2.Hpy1152ORF7815P |
| 7820 | M | M1.HpyNCI56VII (100% identity) | CCTC | M1.Hpy1152ORF7815P |
| 7825 | agmatine deiminase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 765 | class I SAM-dependent DNA methyltransferase | |||
| 770 | R | HpyNCI56ORFB1P (100% identity) | Hpy1152ORF775P | |
| 775 | M | M.HpyNCI56ORFB1P (100% identity) | M.Hpy1152ORF775P | |
| 780 | ATP-dependent DNA helicase RecG | |||
| 1110 | biotin synthase | |||
| 1115 | R | Hpy200831ORF6545P (100% identity) | Hpy1152ORF1120P | |
| 1120 | M | M.HpyNCI56ORFYP (100% identity) | M.Hpy1152ORF1120P | |
| 1125 | DNA/RNA non-specific endonuclease | |||
| 1175 | rod shape-determining protein MreC | |||
| 1180 | R | HpyNCI56ORFWP (100% identity) | Hpy1152ORF1185P | |
| 1185 | M | M.HpyNCI56ORFWP (99% identity) | M.Hpy1152ORF1185P | |
| 1190 | response regulator | |||