|
Putative Helicobacter pylori C-Mx-2010-12 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,658,253 bp
GenBank #: CP032024
REBASE acronym: Hpy201012
Org_num: 37779
All begin D2C87_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
1030 | type I restriction endonuclease | |||
1035 | M | M.HpyNCI14ORFGP (100% identity) | M.Hpy201012ORF1035P | |
1040 | S | S.HpyNCI14ORFGP (100% identity) | S.Hpy201012ORF1035P | |
1045 | R | HpyNCI14ORFGP (100% identity) | Hpy201012ORF1035P | |
1050 | hydroxyethylthiazole kinase | |||
1330 | cadmium-translocating P-type ATPase | |||
1335 | S | S.HpyNCI14ORFHP (100% identity) | S.Hpy201012ORF1335P | |
1340 | restriction endonuclease subunit S | |||
3020 | DUF115 domain-containing protein | |||
3025 | R | HpyNCI14ORFPP (100% identity) | Hpy201012ORF3030P | |
3030 | M | M.HpyNCI14ORFPP (100% identity) | M.Hpy201012ORF3030P | |
3035 | S | S.HpyNCI14ORFPP (100% identity) | S.Hpy201012ORF3030P | |
3045 | RNA degradosome polyphosphate kinase | |||
5680 | M48 family peptidase | |||
5685 | R | HpyNCI14ORFXP (96% identity) | Hpy201012ORF5690P | |
5690 | M | M.HpyNCI14ORFXP (98% identity) | M.Hpy201012ORF5690P | |
5695 | CAAX protease | |||
5700 | S | S.HpyNCI14ORFXP (100% identity) | S.Hpy201012ORF5690P | |
5705 | cagY like protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
715 | ATP-dependent helicase | |||
720 | M | M.HpyME41II (97% identity) | GTNNAC | M.Hpy201012ORF720P |
725 | R | HpyNCI14XIIIP (100% identity) | GTNNAC | Hpy201012ORF720P |
730 | flagellar hook protein FlgE | |||
1850 | acetone carboxylase subunit gamma | |||
1855 | R | HpyU420IVP (99% identity) | CCNNGG | Hpy201012ORF1860P |
1860 | M | M.HpySP318IV (100% identity) | CCNNGG | M.Hpy201012ORF1860P |
1865 | 3-5 exonuclease | |||
1965 | helicase | |||
1970 | RM | RM2.HpyNCI14ORFJP (100% identity) | Hpy201012ORF1970P | |
1975 | (Fe-S)-binding protein | |||
2795 | M23 family peptidase | |||
2800 | R | HpyNCI14IXP (92% identity) | GTAC | Hpy201012ORF2805P |
??? | M | M.HpyNCI14IX (99% identity) | GTAC | M.Hpy201012ORF2805P |
2810 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
2905 | 81 aa hypothetical protein | |||
2910 | R | HpyME41ORF2310P (100% identity) | ACGT | Hpy201012ORF2915P |
2915 | M | M.HpyNCI14ORFMP (100% identity) | ACGT | M.Hpy201012ORF2915P |
2920 | GIY-YIG nuclease family protein | |||
2915 | DNA cytosine methyltransferase | |||
2920 | R | HpyNCI14VIP (100% identity) | ACNGT | Hpy201012ORF2925P |
2925 | M | M.HpyU004II (100% identity) | ACNGT | M.Hpy201012ORF2925P |
2930 | translational GTPase TypA | |||
2940 | 264 aa hypothetical protein | |||
2945 | M | M.HpyNCI14VII (100% identity) | ATTAAT | M.Hpy201012ORF2945P |
2950 | outer membrane beta-barrel protein | |||
3640 | 120 aa hypothetical protein | |||
3645 | M | M.HpyNCI14XII (100% identity) | CTNAG | M.Hpy201012ORF3645P |
3650 | R | HpyNCI14XIIP (96% identity) | CTNAG | Hpy201012ORF3645P |
3655 | DUF2334 domain-containing protein | |||
3905 | AAA family ATPase | |||
3910 | M | M.HpyU416IV (72% identity) | M.Hpy201012ORF3910P | |
3915 | transposase | |||
3920 | IS607 family transposase | |||
3925 | M | M2.HpyNCI14ORFRP (100% identity) | M.Hpy201012ORF3925P | |
??? | R | HpyCOL202ORF1515P (92% identity) | Hpy201012ORF3925P | |
3935 | 69 aa hypothetical protein | |||
3935 | 69 aa hypothetical protein | |||
3940 | M | M.HpyNCI14XI (93% identity) | TCGA | M.Hpy201012ORF3940P |
3945 | exodeoxyribonuclease VII large subunit | |||
4360 | pseudaminic acid synthase | |||
4365 | R | R2.HpyPE113ORF865P (100% identity) | R2.Hpy201012ORF4375P | |
4370 | R | HpyNCI14McrBP (100% identity) | R1.Hpy201012ORF4375P | |
4375 | M | M.HpyU302ORF870P (100% identity) | M.Hpy201012ORF4375P | |
4380 | elongation factor P | |||
4745 | HAMP domain-containing protein | |||
??? | M | M1.HpyNCI14ORFTP (100% identity) | M.Hpy201012ORF4750P | |
4755 | HNH endonuclease | |||
4805 | alpha-1,2-fucosyltransferase | |||
4810 | M | M.HpyNCI14III (100% identity) | GATC | M.Hpy201012ORF4810P |
4815 | R | HpyNCI14IIIP (100% identity) | GATC | Hpy201012ORF4810P |
4825 | [acyl-carrier-protein] S-malonyltransferase | |||
5020 | sodium/proline symporter PutP | |||
5025 | M | M2.HpyNCI14ORFVP (100% identity) | CCTC | M2.Hpy201012ORF5025P |
5030 | M | M.HpyNCI2aX (100% identity) | CCTC | M1.Hpy201012ORF5025P |
5035 | agmatine deiminase | |||
5570 | elongation factor Ts | |||
5575 | R | HpySP309XIIIP (100% identity) | TGCA | Hpy201012ORF5580P |
5580 | M | M.HpyNCI14XIV (100% identity) | TGCA | M.Hpy201012ORF5580P |
5585 | 68 aa hypothetical protein | |||
5780 | DEAD/DEAH box helicase | |||
5785 | RM | HpyNCI14ORFZAP (98% identity) | Hpy201012ORF5785AP | |
5790 | transposase | |||
5795 | IS607 family transposase | |||
5800 | RM | HpyNCI14ORFZBP (98% identity) | Hpy201012ORF5785BP | |
5805 | 173 aa hypothetical protein | |||
5890 | outer membrane protein | |||
5895 | R | HpyNCI14XP (100% identity) | CCATC | Hpy201012ORF5900P |
??? | M | M1.HpySP201III (93% identity) | CCATC | M1.Hpy201012ORF5900P |
??? | M | M2.HpyNCI14X (79% identity) | CCATC | M2.Hpy201012ORF5900P |
5910 | YjgP/YjgQ family permease | |||
6035 | ComF family protein | |||
6040 | RM | HpyNCI14ORFB1P (100% identity) | Hpy201012ORF6040P | |
6045 | S | S.HpyG001ORF7085P (95% identity) | S.Hpy201012ORF6040P | |
6050 | DNA polymerase I | |||
6485 | site-specific DNA-methyltransferase | |||
6490 | M | M1.HpyME41ORF6625P (99% identity) | GAAGA | M1.Hpy201012ORF6490P |
6495 | M | M2.HpyNCI14ORFE1P (100% identity) | GAAGA | M2.Hpy201012ORF6490P |
??? | R | HpyNCI14ORFE1P (100% identity) | GAAGA | Hpy201012ORF6490P |
6510 | DNA-binding response regulator | |||
6560 | carboxylating nicotinate-nucleotide | |||
6565 | RM | HpyNCI14ORFF1P (100% identity) | Hpy201012ORF6565P | |
6570 | site-specific DNA-methyltransferase | |||
6565 | DNA methyltransferase | |||
6570 | M | M.HpyNCI14IV (100% identity) | GANTC | M.Hpy201012ORF6570P |
6575 | R | HpyNCI14IVP (100% identity) | GANTC | Hpy201012ORF6570P |
6580 | S41 family peptidase | |||
7310 | IceA2 protein | |||
7315 | M | M.HpySP318I (100% identity) | CATG | M.Hpy201012ORF7315P |
7320 | HAD family hydrolase | |||
7500 | purine-nucleoside phosphorylase | |||
7505 | R | HpyPO12XIIIP (100% identity) | TCNGA | Hpy201012ORF7510P |
7510 | M | M.HpyME41V (100% identity) | TCNGA | M.Hpy201012ORF7510P |
7515 | 91 aa hypothetical protein | |||
7790 | flagellar biosynthesis anti-sigma factor FlgM | |||
7795 | M | M.HpyNCI14ORFCP (100% identity) | M.Hpy201012ORF7795P | |
7800 | 144 aa hypothetical protein | |||
7980 | Laminin subunit alpha-2 precursor | |||
7985 | R | HpyNCI14VP (100% identity) | TCNNGA | Hpy201012ORF7990P |
7990 | M | M.HpySP606ORF1890P (100% identity) | TCNNGA | M.Hpy201012ORF7990P |
7995 | acetyl-CoA carboxylase biotin carboxylase | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
5765 | ATP-dependent DNA helicase RecG | |||
??? | M | M.HpyNCI14ORFYP (100% identity) | M.Hpy201012ORF5770P | |
5780 | R | HpyNCI14ORFYP (100% identity) | Hpy201012ORF5770P | |
5785 | class I SAM-dependent DNA methyltransferase | |||
6410 | biotin synthase | |||
6415 | R | HpyNCI14ORFC1P (95% identity) | Hpy201012ORF6420P | |
6420 | M | M.HpyNCI14ORFC1P (100% identity) | M.Hpy201012ORF6420P | |
6425 | DNA/RNA non-specific endonuclease | |||
6475 | rod shape-determining protein MreC | |||
6480 | R | HpyNCI14ORFD1P (100% identity) | Hpy201012ORF6485P | |
6485 | M | M.HpyNCI14ORFD1P (100% identity) | M.Hpy201012ORF6485P | |
6490 | site-specific DNA-methyltransferase |