Helicobacter pylori C-Mx-2010-3 |
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Putative Helicobacter pylori C-Mx-2010-3 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,642,343 bp
GenBank #: CP032023
REBASE acronym: Hpy20103
Org_num: 37780
All begin D2C88_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 125 | DUF115 domain-containing protein | |||
| 130 | R | HpyNCI39ORFKP (100% identity) | Hpy20103ORF135P | |
| 135 | M | M.HpyNCI39ORFKP (100% identity) | M.Hpy20103ORF135P | |
| 140 | S | S.HpyNCI39ORFKP (100% identity) | S.Hpy20103ORF135P | |
| 150 | RNA degradosome polyphosphate kinase | |||
| 2875 | M48 family peptidase | |||
| 2880 | R | HpyNCI39ORFSP (100% identity) | Hpy20103ORF2885P | |
| 2885 | M | M.Hpy20105ORF2660P (100% identity) | M.Hpy20103ORF2885P | |
| 2890 | S | S.Hpy20105ORF2660P (100% identity) | S.Hpy20103ORF2885P | |
| 2895 | FAD-dependent thymidylate synthase | |||
| 6185 | type I restriction endonuclease | |||
| 6190 | M | M.HpyNCI39ORFBP (94% identity) | M.Hpy20103ORF6190P | |
| 6195 | S | S.HpyNCI39ORFBP (100% identity) | S.Hpy20103ORF6190P | |
| 6200 | R | HpyNCI39ORFBP (100% identity) | Hpy20103ORF6190P | |
| 6205 | hydroxyethylthiazole kinase | |||
| 6480 | cadmium-translocating P-type ATPase | |||
| 6485 | S | S.HpyNCI39ORFDP (100% identity) | S.Hpy20103ORF6485P | |
| 6490 | 64 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 25 | catalase | |||
| 30 | M | M.HpyPO01ORF2260P (100% identity) | M.Hpy20103ORF8100P | |
| 35 | GIY-YIG nuclease family protein | |||
| 30 | DNA cytosine methyltransferase | |||
| 35 | R | HpySP312IIP (100% identity) | ACNGT | Hpy20103ORF8110P |
| 40 | M | M.HpyNCI39XI (100% identity) | ACNGT | M.Hpy20103ORF8110P |
| 45 | translational GTPase TypA | |||
| 50 | lipopolysaccharide heptosyltransferase family | |||
| 55 | M | M.HpyNCI39XII (100% identity) | ATTAAT | M.Hpy20103ORF55P |
| 60 | outer membrane beta-barrel protein | |||
| 760 | 125 aa hypothetical protein | |||
| 765 | M | M.HpySP305VII (100% identity) | CTNAG | M.Hpy20103ORF765P |
| 770 | R | HpySP305VIIP (100% identity) | CTNAG | Hpy20103ORF765P |
| 775 | DUF2334 domain-containing protein | |||
| 1005 | AAA family ATPase | |||
| 1010 | M | M.HpyNCI39ORFNP (100% identity) | CCGG | M.Hpy20103ORF1010P |
| ??? | R | Hpy20105ORF4530P (100% identity) | CCGG | Hpy20103ORF1010P |
| 1020 | 204 aa hypothetical protein | |||
| 1020 | 204 aa hypothetical protein | |||
| 1025 | M | M.Hpy20105ORF4515P (100% identity) | TCGA | M.Hpy20103ORF1025P |
| 1030 | exodeoxyribonuclease VII large subunit | |||
| 2015 | alpha-1,2-fucosyltransferase | |||
| 2020 | M | M.HpyNCI39XIII (100% identity) | GATC | M.Hpy20103ORF2020P |
| 2025 | 328 aa hypothetical protein | |||
| 2220 | sodium/proline symporter PutP | |||
| 2225 | M | M.Hpy20105ORF3320P (100% identity) | M.Hpy20103ORF2225P | |
| 2230 | R | HpySP807VP (100% identity) | Hpy20103ORF2225P | |
| 2235 | HNH endonuclease | |||
| 2230 | restriction endonuclease | |||
| ??? | R | HpyNCI39VIIIP (100% identity) | Hpy20103ORF2240P | |
| 2240 | M | M3.HpyNCI39VIIIP (89% identity) | CCTC | M2.Hpy20103ORF2240AP |
| 2245 | transposase | |||
| 2250 | IS200/IS605 family transposase | |||
| 2255 | M | M2.Hpy20105ORF3285BP (100% identity) | CCTC | M2.Hpy20103ORF2240BP |
| 2260 | M | M1.HpyNCI39VIII (100% identity) | CCTC | M1.Hpy20103ORF2240P |
| 2265 | agmatine deiminase | |||
| 2780 | elongation factor Ts | |||
| 2785 | R | HpyNCI39IIIP (100% identity) | TGCA | Hpy20103ORF2790P |
| 2790 | M | M.HpyNCI39III (100% identity) | TGCA | M.Hpy20103ORF2790P |
| 2795 | 68 aa hypothetical protein | |||
| 2955 | DEAD/DEAH box helicase | |||
| 2960 | RM | HpyNCI39ORFTP (100% identity) | Hpy20103ORF2960P | |
| 2965 | 132 aa hypothetical protein | |||
| 3175 | ComF family protein | |||
| 3180 | RM | HpyNCI39ORFVP (100% identity) | Hpy20103ORF3180P | |
| 3185 | S | S.HpyNCI39ORFVP (100% identity) | S.Hpy20103ORF3180P | |
| 3190 | DNA polymerase I | |||
| 3635 | response regulator | |||
| 3640 | M | M2.Hpy20105ORF1905P (100% identity) | GAAGA | M1.Hpy20103ORF3640P |
| ??? | M | M1.Hpy20105ORF1905P (100% identity) | GAAGA | M2.Hpy20103ORF3640P |
| 3650 | R | HpyNCI39IIP (100% identity) | GAAGA | Hpy20103ORF3640P |
| 3655 | DNA-binding response regulator | |||
| 3705 | carboxylating nicotinate-nucleotide | |||
| ??? | RM | HpyNCI20ORFOP (100% identity) | Hpy20103ORF3710P | |
| 3720 | site-specific DNA-methyltransferase | |||
| 3715 | DNA methyltransferase | |||
| 3720 | M | M.HpyNCI39ORFZP (91% identity) | M.Hpy20103ORF3720P | |
| ??? | R | HpyNCI39ORFZP (100% identity) | Hpy20103ORF3720P | |
| 3735 | S41 family peptidase | |||
| 4460 | serine acetyltransferase | |||
| 4465 | R | R2.Hpy20105ORF1080P (100% identity) | CATG | R1.Hpy20103ORF4475P |
| 4470 | R | HpySP13IP (100% identity) | CATG | R2.Hpy20103ORF4475P |
| 4475 | M | M.HpyNCI39I (100% identity) | CATG | M.Hpy20103ORF4475P |
| 4480 | HAD family hydrolase | |||
| 4970 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 4975 | M | M.HpyNCI39ORFC1P (100% identity) | GCGC | M.Hpy20103ORF4975P |
| 4980 | 144 aa hypothetical protein | |||
| 5180 | Laminin subunit alpha-2 precursor | |||
| 5185 | R | HpyNCI39IVP (100% identity) | TCNNGA | Hpy20103ORF5190P |
| 5190 | M | M.HpyNCI39IV (100% identity) | TCNNGA | M.Hpy20103ORF5190P |
| 5195 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5865 | ATP-dependent helicase | |||
| 5870 | M | M.Hpy20105ORF7740P (100% identity) | GTNNAC | M.Hpy20103ORF5870P |
| 5875 | R | HpyNCI39VIP (100% identity) | GTNNAC | Hpy20103ORF5870P |
| 5880 | flagellar hook protein FlgE | |||
| 6980 | acetone carboxylase subunit gamma | |||
| 6985 | R | HpyNCI39XP (100% identity) | CCNNGG | Hpy20103ORF6990P |
| 6990 | M | M.HpyU004V (100% identity) | CCNNGG | M.Hpy20103ORF6990P |
| 6995 | 3-5 exonuclease | |||
| 7100 | SIR2 family protein | |||
| 7105 | RM | Hpy20105ORF6500P (100% identity) | Hpy20103ORF7105P | |
| 7110 | (Fe-S)-binding protein | |||
| 7990 | M23 family peptidase | |||
| ??? | R | HpyNCI39VIIP (100% identity) | GTAC | Hpy20103ORF8000P |
| ??? | M | M.HpyNCI39VII (100% identity) | GTAC | M.Hpy20103ORF8000P |
| 8005 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2945 | ATP-dependent DNA helicase RecG | |||
| 2950 | M | M.HpyNCI39ORFUP (100% identity) | M.Hpy20103ORF2950P | |
| 2955 | R | HpyNCI39ORFUP (100% identity) | Hpy20103ORF2950P | |
| 2960 | class I SAM-dependent DNA methyltransferase | |||
| 3550 | type III restriction endonuclease subunit R | |||
| 3555 | R | HpyNCI39ORFWP (96% identity) | Hpy20103ORF3560P | |
| 3560 | M | M.HpyNCI39ORFWP (100% identity) | M.Hpy20103ORF3560P | |
| 3565 | DNA/RNA non-specific endonuclease | |||
| 3620 | rod shape-determining protein MreC | |||
| 3625 | R | HpyNCI39ORFYP (100% identity) | Hpy20103ORF3630P | |
| 3630 | M | M.HpyNCI39ORFYP (100% identity) | M.Hpy20103ORF3630P | |
| 3635 | response regulator | |||