Salmonella enterica subsp. enterica ST1539 |
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Putative Salmonella enterica subsp. enterica ST1539 RM systems
Ref: Kim,E. et al. J. Microbiol. Biotechnol. 29 (6), 962-972 (2019)
REBASE ref # 29029
| Sequence length: | GenBank #: | |
| Chromosome: | 4,905,039 bp | CP035301 |
| plasmid pST1539: | 93,876 bp | CP035302 |
REBASE acronym: Sen1539
Org_num: 35683
All begin ST1539_, ST1539_p
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3574 | restriction endonuclease | |||
| 3575 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen1539ORF3576P |
| 3576 | M | M.StyUK1II (99% identity) | GAGNNNNNNRTAYG | M.Sen1539ORF3576P |
| 3577 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen1539ORF3576P |
| 3578 | Toxic protein SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 340 | Cell division protein DamX | |||
| 341 | M | DNA adenine methylase | GATC | M.Sen1539DamP |
| 342 | Ribulose-phosphate 3-epimerase | |||
| 427 | periplasmic protein | |||
| 428 | M | adenine-specific DNA-methyltransferase | ATGCAT | M.Sen1539ORF428P |
| 429 | DNA-binding protein Fis | |||
| 1026 | 75 aa hypothetical protein | |||
| 1027 | M | M.SspA39ORFGP (100% identity) | GATC | M.Sen1539ORF1027P |
| 1028 | endonuclease | |||
| 1113 | 221 aa hypothetical protein | |||
| 1114 | M | M.Sens29958ORF6205P (100% identity) | M.Sen1539ORF1114P | |
| 1115 | 217 aa hypothetical protein | |||
| 1687 | 160 aa hypothetical protein | |||
| 1688 | M | M.StyUK1V (100% identity) | GATC | M.Sen1539ORF1688P |
| 1689 | Crossover junction endodeoxyribonuclease RusA | |||
| 1730 | phosphohydrolase | |||
| 1731 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen1539DcmP |
| 1732 | V | Very short patch repair protein | V.Sen1539DcmP | |
| 1733 | inner membrane transporter YedA | |||
| 3604 | DNA repair ATPase | |||
| ??? | RM | SenWarORF11445P (100% identity) | Sen1539ORF3605P | |
| 3606 | 363 aa hypothetical protein | |||
| 3863 | Crossover junction endodeoxyribonuclease RusA | |||
| 3864 | M | M.Sens013ORF21535P (100% identity) | M.Sen1539ORF3864P | |
| 3865 | phage protein | |||
| plasmid pST1539 | ||||
| 77 | 73 aa hypothetical protein | |||
| 78 | M | M.StyUK1ORFAP (100% identity) | M.Sen1539ORF78P | |
| 79 | 156 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3167 | cytochrome ubiquinol oxidase subunit I | |||
| 3168 | R | StyUK1IP (99% identity) | CAGAG | Sen1539ORF3169P |
| 3169 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen1539ORF3169P |
| 3170 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3573 | membrane protein | |||
| 3574 | R | StyUK1MrrP (100% identity) | Sen1539MrrP | |
| 3575 | type I restriction-modification system | |||