Helicobacter pylori B147 |
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Putative Helicobacter pylori B147 RM systems
Ref: Su,H. et al. Sci Rep 9 (1), 11203 (2019)
REBASE ref # 29574
Complete sequence: 1,631,093 bp
GenBank #: CP024946
REBASE acronym: HpyB147
Org_num: 37466
All begin CV730_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 375 | 303 aa hypothetical protein | |||
| 380 | S | S.HpyK037XV (97% identity) | S.HpyB147ORF385P | |
| 385 | M | M.HpySP401ORF7275P (96% identity) | M.HpyB147ORF385P | |
| 390 | R | HpyU431XIIIP (99% identity) | HpyB147ORF385P | |
| 395 | metal-dependent hydrolase | |||
| 2945 | RNA degradosome polyphosphate kinase | |||
| 2955 | S | S.HpyJ001ORF2280P (98% identity) | S.HpyB147ORF2960P | |
| 2960 | M | M.HpyHORF438P (96% identity) | M.HpyB147ORF2960P | |
| 2965 | R | HpyNCI57ORFIP (87% identity) | HpyB147ORF2960P | |
| 2970 | 631 aa hypothetical protein | |||
| 4845 | outer membrane beta-barrel protein HofF | |||
| 4850 | S | S.HpyPO104ORF4270P (96% identity) | CTANNNNNNNNTTC | S.HpyB147ORF4850P |
| 4855 | cadmium-translocating P-type ATPase | |||
| 5130 | hydroxyethylthiazole kinase | |||
| 5135 | R | HpyGE9XIVP (96% identity) | HpyB147ORF5145P | |
| 5140 | S | S.HpyPO07ORF2585P (94% identity) | S.HpyB147ORF5145P | |
| 5145 | M | M.HpyPE13ORF4255P (93% identity) | M.HpyB147ORF5145P | |
| 5150 | phosphatase PAP2 family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | DEAD/DEAH box helicase | |||
| 50 | RM | HpyU432ORF6830P (79% identity) | HpyB147ORF50P | |
| 55 | 69 aa hypothetical protein | |||
| 130 | outer membrane protein | |||
| 135 | R | HpyU101IIIP (100% identity) | CCATC | HpyB147ORF140P |
| ??? | M | M1.HpyU101III (93% identity) | CCATC | M1.HpyB147ORF140P |
| ??? | M | M1.HpyF011ORF7220P (77% identity) | CCATC | M2.HpyB147ORF140P |
| 150 | permease | |||
| 275 | amidophosphoribosyltransferase | |||
| 280 | RM | HpyU101ORF7110P (98% identity) | HpyB147ORF280P | |
| 285 | S | S.HpyKA1XVI (51% identity) | S1.HpyB147ORF280P | |
| 290 | S | S.Hpy75ORF7320P (46% identity) | S2.HpyB147ORF280P | |
| 295 | DNA polymerase I | |||
| 475 | 68 aa hypothetical protein | |||
| ??? | M | M.HpyU436X (100% identity) | TGCA | M.HpyB147ORF485P |
| 490 | R | HpyU436XP (100% identity) | TGCA | HpyB147ORF485P |
| 495 | cytochrome C | |||
| 1020 | agmatine deiminase | |||
| 1025 | M | M1.HpySWT08VIII (96% identity) | CCTC | M1.HpyB147ORF1025P |
| 1030 | M | M2.HpyTW06VP (98% identity) | CCTC | M2.HpyB147ORF1025P |
| ??? | R | HpyPE119VIIP (85% identity) | CCTC | HpyB147ORF1025P |
| 1040 | 60 aa hypothetical protein | |||
| 1035 | restriction endonuclease | |||
| 1045 | M | M.HpyU101VIII (100% identity) | GTSAC | M.HpyB147ORF1045P |
| 1050 | R | HpyU101VIIIP (100% identity) | GTSAC | HpyB147ORF1045P |
| 1055 | type II restriction endonuclease | |||
| 1250 | [acyl-carrier-protein] S-malonyltransferase | |||
| 1260 | R | HpyU436VIIP (99% identity) | GATC | HpyB147ORF1265P |
| 1265 | M | M.HpyU101V (100% identity) | GATC | M.HpyB147ORF1265P |
| 1270 | alpha-1,2-fucosyltransferase | |||
| 1680 | elongation factor P | |||
| 1685 | M | M.HpyU101ORF870P (100% identity) | M.HpyB147ORF1685P | |
| 1690 | R | R1.HpyU101ORF870P (100% identity) | R1.HpyB147ORF1685P | |
| 1695 | R | R2.HpyU101ORF870P (97% identity) | R2.HpyB147ORF1685P | |
| 1700 | pseudaminic acid synthase | |||
| 2100 | exodeoxyribonuclease VII large subunit | |||
| 2105 | M | M.HpyMT5111X (97% identity) | TCGA | M.HpyB147ORF2105P |
| 2110 | 204 aa hypothetical protein | |||
| 2110 | 204 aa hypothetical protein | |||
| ??? | R | HpyU101ORF1300P (97% identity) | HpyB147ORF2120P | |
| 2120 | M | M.HpyU101ORF1300P (100% identity) | M.HpyB147ORF2120P | |
| 2125 | ATP-dependent chaperone ClpB | |||
| 2520 | elongation factor 4 | |||
| 2525 | M | M.HpyKG3ORF1905P (99% identity) | M.HpyB147ORF2525P | |
| 2530 | 92 aa hypothetical protein | |||
| 3040 | 369 aa hypothetical protein | |||
| 3045 | M | M.HpyU405II (98% identity) | ATTAAT | M.HpyB147ORF3045P |
| 3050 | glycosyltransferase 9 family protein | |||
| 3055 | translational GTPase TypA | |||
| 3060 | M | M.HpyU101ORF2230P (97% identity) | M.HpyB147ORF3060P | |
| 3065 | catalase | |||
| 3160 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3165 | M | M.HpyGRE039VII (98% identity) | GTAC | M.HpyB147ORF3165P |
| 3170 | R | HpyU101VIP (98% identity) | GTAC | HpyB147ORF3165P |
| 3175 | M23 family peptidase | |||
| 4225 | glycerol-3-phosphate dehydrogenase | |||
| 4230 | RM | HpyU101ORF3210P (99% identity) | HpyB147ORF4230P | |
| 4235 | 65 aa hypothetical protein | |||
| 5430 | flagellar hook protein FlgE | |||
| 5435 | R | HpyU101VIIP (100% identity) | GTNNAC | HpyB147ORF5440P |
| 5440 | M | M.HpyIS2XIII (97% identity) | GTNNAC | M.HpyB147ORF5440P |
| 5445 | ATP-dependent DNA helicase | |||
| 6140 | acetyl-CoA carboxylase biotin carboxylase | |||
| 6145 | M | M.HpyPE115XIV (100% identity) | TCNNGA | M.HpyB147ORF6145P |
| 6150 | R | HpyN6ORFKP (99% identity) | TCNNGA | HpyB147ORF6145P |
| 6155 | Laminin subunit alpha-2 precursor | |||
| 6335 | 144 aa hypothetical protein | |||
| 6340 | M | M.HpyAL6XV (98% identity) | GCGC | M.HpyB147ORF6340P |
| 6345 | flagellar biosynthesis protein FlgM | |||
| 6630 | purine-nucleoside phosphorylase | |||
| 6635 | M | M.HpyR3cORF1510P (99% identity) | TCNGA | M.HpyB147ORF6635P |
| 6640 | R | HpyU408XP (100% identity) | TCNGA | HpyB147ORF6635P |
| 6645 | purine-nucleoside phosphorylase | |||
| 6825 | HAD family hydrolase | |||
| 6830 | M | M.HpyU101I (100% identity) | CATG | M.HpyB147ORF6830P |
| ??? | R | HpyU101IP (75% identity) | CATG | HpyB147ORF6830P |
| 6840 | serine O-acetyltransferase | |||
| 7575 | peptidase S41 | |||
| 7580 | RM | HpySP105ORF6250P (87% identity) | HpyB147ORF7580P | |
| 7585 | nicotinate-nucleotide diphosphorylase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyU115ORF7455P (95% identity) | M.HpyB147ORF40P | |
| 45 | R | HpySWT11ORF7325P (95% identity) | HpyB147ORF40P | |
| 50 | class I SAM-dependent DNA methyltransferase | |||
| 7635 | DNA-binding response regulator | |||
| 7640 | M | M.HpyAL10ORF390P (94% identity) | M.HpyB147ORF7640P | |
| 7645 | R | HpyU101ORF6480P (95% identity) | HpyB147ORF7640P | |
| 7650 | rod shape-determining protein MreC | |||
| 7700 | DNA/RNA non-specific endonuclease | |||
| 7705 | M | M.HpyU407XV (98% identity) | M.HpyB147ORF7705P | |
| 7710 | R | HpyBR5ORF7445P (89% identity) | HpyB147ORF7705P | |
| 7715 | biotin synthase | |||