Helicobacter pylori J182 |
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Putative Helicobacter pylori J182 RM systems
Ref: Su,H. et al. Sci Rep 9 (1), 11203 (2019)
REBASE ref # 29574
Complete sequence: 1,648,077 bp
GenBank #: CP024947
REBASE acronym: HpyJ182
Org_num: 37479
All begin CV729_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 590 | 254 aa hypothetical protein | |||
| 595 | S | S.HpySW07ORF7450P (88% identity) | S.HpyJ182ORF605P | |
| 600 | CAAX protease | |||
| 605 | M | M.HpyLIM8XI (95% identity) | M.HpyJ182ORF605P | |
| 610 | R | HpyIS9ORF7135P (95% identity) | HpyJ182ORF605P | |
| 615 | metal-dependent hydrolase | |||
| 3255 | RNA degradosome polyphosphate kinase | |||
| 3265 | S | S.HpyBR2ORF2180P (98% identity) | S.HpyJ182ORF3270P | |
| 3270 | M | M.HpyIS1ORF2170P (97% identity) | M.HpyJ182ORF3270P | |
| 3275 | R | HpyK004ORF2315P (89% identity) | HpyJ182ORF3270P | |
| 3280 | 631 aa hypothetical protein | |||
| 5285 | hydroxyethylthiazole kinase | |||
| 5290 | R | HpyIS7ORF3475P (97% identity) | HpyJ182ORF5305P | |
| 5295 | 67 aa hypothetical protein | |||
| 5300 | S | S.Hpyfe15ORF3000P (94% identity) | S.HpyJ182ORF5305P | |
| 5305 | M | M.HpyIS2XVII (98% identity) | M.HpyJ182ORF5305P | |
| 5310 | type I restriction endonuclease | |||
| 8000 | nickel transporter | |||
| 8005 | S | S.HpyGCT27ORF2750P (97% identity) | S.HpyJ182ORF8005P | |
| 8010 | formyltetrahydrofolate deformylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | DEAD/DEAH box helicase | |||
| 55 | RM | HpySP12ORF7115P (90% identity) | HpyJ182ORF55P | |
| 60 | 145 aa hypothetical protein | |||
| 135 | outer membrane protein | |||
| 140 | R | HpyIS11IVP (97% identity) | CCATC | HpyJ182ORF145P |
| ??? | M | M1.HpyPOR110II (93% identity) | CCATC | M1.HpyJ182ORF145P |
| ??? | M | M2.HpySW30VIII (76% identity) | CCATC | M2.HpyJ182ORF145P |
| 155 | permease | |||
| 280 | amidophosphoribosyltransferase | |||
| 285 | RM | HpyIS10ORF6720P (99% identity) | HpyJ182ORF285P | |
| 290 | S | S.HpyU208ORF7110P (94% identity) | S.HpyJ182ORF285P | |
| 295 | DNA polymerase I | |||
| 700 | 68 aa hypothetical protein | |||
| ??? | M | M.HpyK51ORF1448P (98% identity) | TGCA | M.HpyJ182ORF710P |
| ??? | R | HpyCA26XIIIP (98% identity) | TGCA | HpyJ182ORF710P |
| 720 | cytochrome C | |||
| 1260 | agmatine deiminase | |||
| 1265 | M | M1.HpySW19VII (99% identity) | CCTC | M1.HpyJ182ORF1265P |
| 1270 | M | M2.HpySW07IXP (99% identity) | CCTC | M2.HpyJ182ORF1265P |
| 1275 | R | Hpy12BORF280P (89% identity) | CCTC | HpyJ182ORF1265P |
| 1280 | 60 aa hypothetical protein | |||
| 1275 | restriction endonuclease | |||
| 1285 | M | M.HpyT022XV (100% identity) | GTSAC | M.HpyJ182ORF1285P |
| 1290 | R | HpyBR15XVP (99% identity) | GTSAC | HpyJ182ORF1285P |
| 1295 | DNA cytosine methyltransferase | |||
| 1485 | 343 aa hypothetical protein | |||
| 1490 | M | M.HpySP05IX (98% identity) | GATC | M.HpyJ182ORF1490P |
| 1495 | alpha-1,2-fucosyltransferase | |||
| 1925 | elongation factor P | |||
| 1930 | M | M.HpyS298ORF6065P (99% identity) | M.HpyJ182ORF1930P | |
| 1935 | 157 aa hypothetical protein | |||
| 1940 | R | R1.HpyIS1ORF860P (96% identity) | R1.HpyJ182ORF1930P | |
| 1945 | R | R2.HpyIS2ORF860P (97% identity) | R2.HpyJ182ORF1930P | |
| 1950 | pseudaminic acid synthase | |||
| 2350 | exodeoxyribonuclease VII large subunit | |||
| 2355 | M | M.HpyL021XIII (97% identity) | TCGA | M.HpyJ182ORF2355P |
| 2360 | 204 aa hypothetical protein | |||
| 2360 | 204 aa hypothetical protein | |||
| 2365 | R | HpyG272VIIIP (97% identity) | CCGG | HpyJ182ORF2370P |
| 2370 | M | M.HpySH014ORF1415P (99% identity) | CCGG | M.HpyJ182ORF2370P |
| 2375 | ATP-dependent chaperone ClpB | |||
| 2605 | polysaccharide deacetylase | |||
| 2610 | R | HpySW33VP (100% identity) | CTNAG | HpyJ182ORF2615P |
| 2615 | M | M.HpyU004IX (98% identity) | CTNAG | M.HpyJ182ORF2615P |
| 2620 | 122 aa hypothetical protein | |||
| 3350 | 367 aa hypothetical protein | |||
| 3355 | M | M.HpyCA8III (97% identity) | ATTAAT | M.HpyJ182ORF3355P |
| 3360 | glycosyltransferase 9 family protein | |||
| 3365 | translational GTPase TypA | |||
| 3370 | M | M.HpySW34IV (99% identity) | ACNGT | M.HpyJ182ORF3370P |
| 3375 | R | HpySP11VP (100% identity) | ACNGT | HpyJ182ORF3370P |
| 3380 | DNA (cytosine-5-)-methyltransferase | |||
| 3375 | restriction endonuclease | |||
| ??? | M | M.HpyLI20XIV (97% identity) | M.HpyJ182ORF3380P | |
| ??? | R | HpySW02ORF3525P (97% identity) | HpyJ182ORF3380P | |
| 3390 | catalase | |||
| 3480 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3485 | M | M.HpyT005XI (98% identity) | GTAC | M.HpyJ182ORF3485P |
| 3490 | R | HpySW21IXP (98% identity) | GTAC | HpyJ182ORF3485P |
| 3495 | M23 family peptidase | |||
| 4355 | glycerol-3-phosphate dehydrogenase | |||
| 4360 | RM | HpySW32ORF3645P (94% identity) | HpyJ182ORF4360P | |
| 4365 | 373 aa hypothetical protein | |||
| 5125 | osmoprotection protein | |||
| 5130 | R | HpySW32XIIP (100% identity) | CGWCG | HpyJ182ORF5135P |
| 5135 | M | M.HpyL019III (99% identity) | CGWCG | M.HpyJ182ORF5135P |
| 5140 | osmoprotection protein | |||
| 5580 | flagellar hook protein FlgE | |||
| 5585 | R | HpyOK44ORFXP (88% identity) | GTNNAC | HpyJ182ORF5590P |
| 5590 | M | M.HpyI001ORF4270P (97% identity) | GTNNAC | M.HpyJ182ORF5590P |
| 5595 | ATP-dependent DNA helicase | |||
| 6310 | acetyl-CoA carboxylase biotin carboxylase | |||
| 6315 | M | M.HpyF004ORF4995P (99% identity) | TCNNGA | M.HpyJ182ORF6315P |
| 6320 | R | HpySW33XIP (98% identity) | TCNNGA | HpyJ182ORF6315P |
| 6325 | Laminin subunit alpha-2 precursor | |||
| 6505 | 144 aa hypothetical protein | |||
| 6510 | M | M.HpyB140ORF1830P (100% identity) | GCGC | M.HpyJ182ORF6510P |
| 6515 | flagellar biosynthesis protein FlgM | |||
| 6975 | HAD family hydrolase | |||
| 6980 | M | M.HpyCOL204I (97% identity) | CATG | M.HpyJ182ORF6980P |
| 6985 | IceA2 protein | |||
| 7725 | peptidase S41 | |||
| ??? | RM | HpyBGR4ORF6420P (86% identity) | HpyJ182ORF7730P | |
| 7735 | nicotinate-nucleotide diphosphorylase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyS298ORF4160P (97% identity) | M.HpyJ182ORF40P | |
| 50 | R | HpySW34ORF7270P (95% identity) | HpyJ182ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 7785 | DNA-binding response regulator | |||
| 7790 | M | M.HpyL022ORF6965P (94% identity) | M.HpyJ182ORF7790P | |
| 7795 | R | HpyB125AORF695P (95% identity) | HpyJ182ORF7790P | |
| 7800 | rod shape-determining protein MreC | |||
| 7845 | DNA/RNA non-specific endonuclease | |||
| 7850 | M | M.HpyIS3ORF6455P (97% identity) | M.HpyJ182ORF7850P | |
| 7855 | R | HpyIS5XIIP (95% identity) | HpyJ182ORF7850P | |
| 7860 | biotin synthase BioB | |||