Helicobacter pylori B140 |
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Putative Helicobacter pylori B140 RM systems
Ref: Su,H. et al. Sci Rep 9 (1), 11203 (2019)
REBASE ref # 29574
Complete sequence: 1,726,836 bp
GenBank #: CP024948
REBASE acronym: HpyB140
Org_num: 37483
All begin CV728_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4855 | hydroxyethylthiazole kinase | |||
| 4860 | R | HpyCA25ORF4065P (93% identity) | HpyB140ORF4870P | |
| 4865 | S | S.Hpyfe112ORF3285P (91% identity) | S.HpyB140ORF4870P | |
| 4870 | M | M.HpyL020II (97% identity) | M.HpyB140ORF4870P | |
| 4875 | type I restriction endonuclease | |||
| 5145 | 631 aa hypothetical protein | |||
| 5150 | R | HpySP107ORF2095P (91% identity) | HpyB140ORF5155P | |
| 5155 | M | M.Hpy499ORF3065P (95% identity) | M.HpyB140ORF5155P | |
| 5160 | S | S.HpyU436XII (96% identity) | S.HpyB140ORF5155P | |
| 5170 | RNA degradosome polyphosphate kinase | |||
| 8450 | metal-dependent hydrolase | |||
| 8455 | R | HpyP005IIIP (95% identity) | HpyB140ORF8460P | |
| 8460 | M | M.HpyISR5ORF7355P (87% identity) | M.HpyB140ORF8460P | |
| 8465 | S | S.HpySW15ORF7345P (96% identity) | S.HpyB140ORF8460P | |
| 8470 | cag pathogenicity island protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | DEAD/DEAH box helicase | |||
| 50 | RM | HpySP504XVI (90% identity) | HpyB140ORF50P | |
| 55 | 184 aa hypothetical protein | |||
| 275 | nuclease | |||
| 280 | R | HpysHP34ORF1435P (100% identity) | HpyB140ORF285P | |
| 285 | M | M.HpyV007ORF6890P (100% identity) | M.HpyB140ORF285P | |
| 290 | S | S.HpySP401ORF6950P (47% identity) | S1.HpyB140ORF285P | |
| 295 | S | S.Hpyfe79ORF270BP (94% identity) | S2.HpyB140ORF285P | |
| 300 | DNA polymerase I | |||
| 580 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| ??? | R | HpyKG8ORF6910P (87% identity) | HpyB140ORF585P | |
| 590 | type II restriction endonuclease | |||
| 585 | restriction endonuclease | |||
| 590 | R | HpyCOL202ORF6590P (35% identity) | HpyB140ORF590P | |
| 595 | peptidase S41 | |||
| 1320 | serine O-acetyltransferase | |||
| ??? | R | HpyI007IP (94% identity) | CATG | HpyB140ORF1340P |
| 1340 | M | M.HpySP308I (98% identity) | CATG | M.HpyB140ORF1340P |
| 1345 | HAD family hydrolase | |||
| 1825 | flagellar biosynthesis protein FlgM | |||
| 1830 | M | M.HpyJ182ORF6510P (100% identity) | GCGC | M.HpyB140ORF1830P |
| 1835 | 144 aa hypothetical protein | |||
| 2025 | Laminin subunit alpha-2 precursor | |||
| 2030 | R | HpyC124ORF5260P (98% identity) | TCNNGA | HpyB140ORF2035P |
| 2035 | M | M.HpyLI07III (99% identity) | TCNNGA | M.HpyB140ORF2035P |
| 2040 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2730 | ATP-dependent DNA helicase | |||
| 2735 | M | M.HpyL004X (96% identity) | GTNNAC | M.HpyB140ORF2735P |
| 2740 | R | HpySP101IXP (97% identity) | GTNNAC | HpyB140ORF2735P |
| 2745 | flagellar hook protein FlgE | |||
| 2945 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyMT5124VIII (97% identity) | GTAC | M.HpyB140ORF2950P |
| 2955 | R | HpyNG17VIIIP (61% identity) | GTAC | HpyB140ORF2950P |
| 2960 | endopeptidase | |||
| 3815 | glycerol-3-phosphate dehydrogenase | |||
| 3820 | RM | HpyLI29ORF3170P (89% identity) | HpyB140ORF3820P | |
| 3825 | 270 aa hypothetical protein | |||
| 5055 | 82 aa hypothetical protein | |||
| ??? | R | HpyL032ORF2395P (72% identity) | ACGT | HpyB140ORF5065P |
| 5065 | M | M.HpySW16ORF3615P (99% identity) | ACGT | M.HpyB140ORF5065P |
| 5070 | translational GTPase TypA | |||
| 5075 | glycosyltransferase 9 family protein | |||
| 5080 | M | M.HpyPE140III (98% identity) | ATTAAT | M.HpyB140ORF5080P |
| 5085 | 367 aa hypothetical protein | |||
| 6060 | ATP-dependent chaperone ClpB | |||
| 6065 | M | M.HpyKH8ORFSP (99% identity) | CCGG | M.HpyB140ORF6065P |
| ??? | R | Hpy1171ORF4985P (95% identity) | CCGG | HpyB140ORF6065P |
| 6080 | 204 aa hypothetical protein | |||
| 6080 | 204 aa hypothetical protein | |||
| 6085 | M | M.Hpy1171ORF4970P (98% identity) | TCGA | M.HpyB140ORF6085P |
| 6090 | exodeoxyribonuclease VII large subunit | |||
| 7135 | alpha-1,2-fucosyltransferase | |||
| 7140 | M | M.HpyU412VI (98% identity) | GATC | M.HpyB140ORF7140P |
| 7145 | 0 aa hypothetical protein | |||
| 7370 | nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | HpyCOL204ORF6185P (90% identity) | HpyB140ORF7375P | |
| 7380 | agmatine deiminase | |||
| 7380 | agmatine deiminase | |||
| 7385 | M | M1.HpyME06VII (99% identity) | CCTC | M1.HpyB140ORF7385P |
| 7390 | M | M2.HpyKG4VIP (98% identity) | CCTC | M2.HpyB140ORF7385P |
| 7395 | R | Hpy030IXP (95% identity) | CCTC | HpyB140ORF7385P |
| 7400 | 60 aa hypothetical protein | |||
| 7395 | restriction endonuclease | |||
| 7405 | M | M.HpyF015XII (100% identity) | GTSAC | M.HpyB140ORF7405P |
| 7410 | R | HpyGRE022XP (99% identity) | GTSAC | HpyB140ORF7405P |
| 7415 | type II restriction endonuclease | |||
| 7470 | type II toxin-antitoxin system HicB family | |||
| 7475 | R | HpyLI20IIP (85% identity) | HpyB140ORF7480P | |
| 7480 | M | M1.HpyG8GORFMP (89% identity) | M1.HpyB140ORF7480P | |
| 7485 | M | M2.HpyF009VIII (100% identity) | GAAGA | M2.HpyB140ORF7480P |
| 7490 | restriction endonuclease subunit M | |||
| 7640 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 7645 | M | M.HpyME09ORF260P (99% identity) | M.HpyB140ORF7645P | |
| 7650 | site-specific DNA-methyltransferase | |||
| 8190 | cytochrome C | |||
| ??? | R | HpyLI23IIP (98% identity) | TGCA | HpyB140ORF8200P |
| 8200 | M | M.Hpy5086ORF7285P (98% identity) | TGCA | M.HpyB140ORF8200P |
| 8205 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyPO18ORF7235P (97% identity) | M.HpyB140ORF40P | |
| 45 | R | HpySP709ORF7510P (94% identity) | HpyB140ORF40P | |
| 50 | type II restriction endonuclease | |||
| 7485 | restriction endonuclease subunit M | |||
| ??? | M | M.HpyAL6ORF395P (95% identity) | M.HpyB140ORF7490P | |
| 7500 | R | HpyPO01ORF6400P (94% identity) | HpyB140ORF7490P | |
| 7505 | rod shape-determining protein MreC | |||
| 7560 | DNA/RNA non-specific endonuclease | |||
| 7565 | M | M.HpyK051ORF6675P (93% identity) | M.HpyB140ORF7565P | |
| 7570 | R | HpyU120ORF6675P (92% identity) | HpyB140ORF7565P | |
| 7575 | biotin synthase | |||