Helicobacter pylori B136A |
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Putative Helicobacter pylori B136A RM systems
Ref: Su,H. et al. Sci Rep 9 (1), 11203 (2019)
REBASE ref # 29574
Complete sequence: 1,663,520 bp
GenBank #: CP024949
REBASE acronym: HpyB136A
Org_num: 37482
All begin CV727_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5085 | hydroxyethylthiazole kinase | |||
| 5090 | R | HpyL006ORF2400P (96% identity) | HpyB136AORF5100P | |
| 5095 | S | S.HpyK99ORFVP (65% identity) | S.HpyB136AORF5100P | |
| 5100 | M | M.HpyI023ORF4140P (92% identity) | M.HpyB136AORF5100P | |
| 5105 | type I restriction endonuclease | |||
| 5385 | 631 aa hypothetical protein | |||
| 5390 | R | HpyIS5ORF4525P (93% identity) | HpyB136AORF5395P | |
| 5395 | M | M.HpyL028ORF2135P (97% identity) | M.HpyB136AORF5395P | |
| 5400 | S | S.HpyF015ORF2185P (98% identity) | S.HpyB136AORF5395P | |
| 5410 | RNA degradosome polyphosphate kinase | |||
| 8065 | metal-dependent hydrolase | |||
| 8070 | M | M.HpySG13ORF7110P (47% identity) | M.HpyB136AORF8070P | |
| 8075 | S | S.HpySW22X (22% identity) | S.HpyB136AORF8070P | |
| 8080 | nicotinate-nucleotide diphosphorylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | DEAD/DEAH box helicase | |||
| 55 | RM | HpyB136AORF65P (99% identity) | HpyB136AORF55P | |
| 60 | DEAD/DEAH box helicase | |||
| 60 | DEAD/DEAH box helicase | |||
| 65 | RM | HpyB136AORF55P (99% identity) | HpyB136AORF65P | |
| 70 | 141 aa hypothetical protein | |||
| 155 | outer membrane protein | |||
| 160 | R | HpyG8GORFBP (96% identity) | CCATC | HpyB136AORF165P |
| ??? | M | M2.HpyPE16VI (93% identity) | CCATC | M1.HpyB136AORF165P |
| ??? | M | M2.HpyT022V (76% identity) | CCATC | M2.HpyB136AORF165P |
| 175 | permease | |||
| ??? | RM | HpyGE19ORF6500P (85% identity) | HpyB136AORF715P | |
| 725 | DNA methyltransferase | |||
| 720 | DNA methyltransferase | |||
| 725 | M | M.HpySWT04IV (98% identity) | GANTC | M.HpyB136AORF725P |
| 730 | R | HpyL015IVP (98% identity) | GANTC | HpyB136AORF725P |
| 735 | peptidase S41 | |||
| 1490 | Laminin subunit alpha-2 precursor | |||
| 1495 | R | HpyU404IXP (99% identity) | TCNNGA | HpyB136AORF1500P |
| 1500 | M | M.HpyCA22XI (98% identity) | TCNNGA | M.HpyB136AORF1500P |
| 1505 | methyltransferase | |||
| 2315 | ATP-dependent DNA helicase | |||
| 2320 | M | M.HpyHPYORF5155P (98% identity) | GTNNAC | M.HpyB136AORF2320P |
| 2325 | R | HpyKA1ORF2295P (89% identity) | GTNNAC | HpyB136AORF2320P |
| 2330 | flagellar hook protein FlgE | |||
| 2570 | serine O-acetyltransferase | |||
| ??? | R | HpyH026IP (72% identity) | CATG | HpyB136AORF2580P |
| 2580 | M | M.HpyLI28I (97% identity) | CATG | M.HpyB136AORF2580P |
| 2585 | HAD family hydrolase | |||
| 3050 | flagellar biosynthesis protein FlgM | |||
| 3055 | M | M.HpyLI21XVI (95% identity) | M.HpyB136AORF3055P | |
| 3060 | 144 aa hypothetical protein | |||
| 3160 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3165 | M | M.HpyT016XI (99% identity) | GTAC | M.HpyB136AORF3165P |
| 3170 | R | HpyIS1VIIP (98% identity) | GTAC | HpyB136AORF3165P |
| 3175 | endopeptidase | |||
| 5285 | catalase | |||
| ??? | R | HpyBR19ORF2340P (67% identity) | ACGT | HpyB136AORF5295P |
| 5295 | M | M.HpyH019ORF2255P (99% identity) | ACGT | M.HpyB136AORF5295P |
| 5300 | translational GTPase TypA | |||
| 5305 | glycosyltransferase 9 family protein | |||
| 5310 | M | M.HpyU431II (98% identity) | ATTAAT | M.HpyB136AORF5310P |
| 5315 | 365 aa hypothetical protein | |||
| 6285 | ATP-dependent chaperone ClpB | |||
| 6290 | M | M.HpyI015IV (100% identity) | CCGG | M.HpyB136AORF6290P |
| 6295 | R | HpySW01ORF1285P (84% identity) | CCGG | HpyB136AORF6290P |
| 6300 | 80 aa hypothetical protein | |||
| 6300 | 80 aa hypothetical protein | |||
| 6305 | M | M.HpyL021XIII (98% identity) | TCGA | M.HpyB136AORF6305P |
| 6310 | exodeoxyribonuclease VII large subunit | |||
| 7215 | alpha-1,2-fucosyltransferase | |||
| 7220 | M | M.HpyBR9VIII (96% identity) | GATC | M.HpyB136AORF7220P |
| 7225 | R | HpyLI07IIP (96% identity) | GATC | HpyB136AORF7220P |
| 7235 | [acyl-carrier-protein] S-malonyltransferase | |||
| 7420 | DNA cytosine methyltransferase | |||
| 7425 | R | HpyP002IVP (96% identity) | CCTC | HpyB136AORF7430P |
| 7430 | M | M2.HpySP604VP (99% identity) | CCTC | M2.HpyB136AORF7430P |
| 7435 | M | M1.HpySW19VII (100% identity) | CCTC | M1.HpyB136AORF7430P |
| 7440 | agmatine deiminase | |||
| 7965 | cytochrome C | |||
| 7970 | R | HpyU436XP (99% identity) | TGCA | HpyB136AORF7975P |
| ??? | M | M.HpyCH114XI (98% identity) | TGCA | M.HpyB136AORF7975P |
| 7985 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyMT5136ORF6880P (96% identity) | M.HpyB136AORF40P | |
| 50 | R | HpyBR5ORF6830P (95% identity) | HpyB136AORF40P | |
| 55 | type II restriction endonuclease | |||
| 3650 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 3655 | R | HpyIS1ORF3800P (96% identity) | HpyB136AORF3660P | |
| 3660 | M | M.HpySP01ORF2600P (93% identity) | M.HpyB136AORF3660P | |
| 3665 | 54 aa hypothetical protein | |||
| 8130 | DNA-binding response regulator | |||
| 8135 | M | M.Hpy478AORFMP (93% identity) | M.HpyB136AORF8135P | |
| 8140 | R | HpySW21ORF6040P (94% identity) | HpyB136AORF8135P | |
| 8145 | rod shape-determining protein MreC | |||