Helicobacter pylori B130A |
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Putative Helicobacter pylori B130A RM systems
Ref: Su,H. et al. Sci Rep 9 (1), 11203 (2019)
REBASE ref # 29574
Complete sequence: 1,646,042 bp
GenBank #: CP024950
REBASE acronym: HpyB130A
Org_num: 37472
All begin CV726_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 375 | 303 aa hypothetical protein | |||
| 380 | S | S.HpyME44XII (97% identity) | CRTANNNNNNRTTT | S.HpyB130AORF385P |
| 385 | M | M.HpySP312ORF7480P (95% identity) | CRTANNNNNNRTTT | M.HpyB130AORF385P |
| 390 | R | Hpy9310ORFNP (95% identity) | CRTANNNNNNRTTT | HpyB130AORF385P |
| 395 | metal-dependent hydrolase | |||
| 3240 | phosphatase PAP2 family protein | |||
| ??? | M | M.HpyI004XII (89% identity) | M.HpyB130AORF3245P | |
| 3255 | S | S.HpyUSU101ORF4170P (80% identity) | S.HpyB130AORF3245P | |
| 3260 | R | Hpy479CORFTP (95% identity) | HpyB130AORF3245P | |
| 3265 | hydroxyethylthiazole kinase | |||
| 5410 | 631 aa hypothetical protein | |||
| 5415 | R | HpyNCI25ORFE1P (91% identity) | HpyB130AORF5420P | |
| 5420 | M | M.HpyPO07III (95% identity) | M.HpyB130AORF5420P | |
| ??? | S | S.HpySW21ORF2265P (98% identity) | S.HpyB130AORF5420P | |
| 5435 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 723 aa hypothetical protein | |||
| 55 | RM | Hpy25AEK9ORFA1P (65% identity) | HpyB130AORF55P | |
| 60 | 145 aa hypothetical protein | |||
| 135 | outer membrane protein | |||
| 140 | R | HpyLIM9IIIP (97% identity) | CCATC | HpyB130AORF145P |
| 145 | M | M1.Hpy13338IV (99% identity) | CCATC | M1.HpyB130AORF145P |
| 150 | M | M1.HpyI011VII (99% identity) | CCATC | M2.HpyB130AORF145P |
| 155 | permease | |||
| 280 | amidophosphoribosyltransferase | |||
| 285 | RM | HpyKH8ORFLP (97% identity) | HpyB130AORF285P | |
| 290 | S | S.HpyPO11ORF7395P (95% identity) | S.HpyB130AORF285P | |
| 295 | DNA polymerase I | |||
| 470 | 68 aa hypothetical protein | |||
| 475 | M | M.HpySW18V (99% identity) | TGCA | M.HpyB130AORF475P |
| 480 | R | HpyGE7XIIIP (98% identity) | TGCA | HpyB130AORF475P |
| 485 | cytochrome C | |||
| 995 | agmatine deiminase | |||
| 1000 | M | M1.HpyME12XIV (99% identity) | CCTC | M1.HpyB130AORF1000P |
| 1005 | M | M2.HpyC61XIIP (98% identity) | CCTC | M2.HpyB130AORF1000P |
| 1010 | R | HpyF002VIIP (92% identity) | CCTC | HpyB130AORF1000P |
| 1015 | 60 aa hypothetical protein | |||
| 1010 | restriction endonuclease | |||
| 1020 | M | M.HpySW34V (100% identity) | GTSAC | M.HpyB130AORF1020P |
| 1025 | R | HpyLIM6IXP (98% identity) | GTSAC | HpyB130AORF1020P |
| 1030 | DNA cytosine methyltransferase | |||
| 1170 | restriction endonuclease subunit M | |||
| 1175 | M | M.HpyU119VI (98% identity) | GAAGA | M1.HpyB130AORF1175P |
| ??? | M | M1.HpyID4V (98% identity) | GAAGA | M2.HpyB130AORF1175P |
| ??? | R | HpyISR10ORF6615P (63% identity) | GAAGA | HpyB130AORF1175P |
| 1185 | DNA-binding response regulator | |||
| 1235 | nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | HpyP003ORF6245P (87% identity) | HpyB130AORF1240P | |
| 1250 | DNA methyltransferase | |||
| 1245 | 342 aa hypothetical protein | |||
| 1250 | M | M.Hpy13094IX (98% identity) | GANTC | M.HpyB130AORF1250P |
| ??? | R | Hpy280AORFXP (95% identity) | GANTC | HpyB130AORF1250P |
| 1265 | peptidase S41 | |||
| 1985 | 56 aa hypothetical protein | |||
| 1990 | R | HpySP13IP (99% identity) | CATG | HpyB130AORF1995P |
| 1995 | M | M.HpySP209I (96% identity) | CATG | M.HpyB130AORF1995P |
| 2000 | HAD family hydrolase | |||
| 2475 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| ??? | R | HpyU436ORF6975P (90% identity) | GAATTC | HpyB130AORF2485P |
| 2485 | M | M.HpyBR6VIII (98% identity) | GAATTC | M.HpyB130AORF2485P |
| 2490 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 2920 | ATP-dependent DNA helicase | |||
| 2925 | M | M.HpyU404XII (97% identity) | GTNNAC | M.HpyB130AORF2925P |
| 2930 | R | HpyU437IXP (100% identity) | GTNNAC | HpyB130AORF2925P |
| 2935 | flagellar hook protein FlgE | |||
| 4050 | 3-5 exonuclease | |||
| 4055 | R | HpyLI29IIP (98% identity) | CCNNGG | HpyB130AORF4060P |
| 4060 | M | M.HpyU422VI (99% identity) | CCNNGG | M.HpyB130AORF4060P |
| 4065 | 3-5 exonuclease | |||
| 5035 | endopeptidase | |||
| 5040 | R | HpyCOL206VIIIP (97% identity) | GTAC | HpyB130AORF5045P |
| 5045 | M | M.HpySP707IX (98% identity) | GTAC | M.HpyB130AORF5045P |
| 5050 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 5135 | catalase | |||
| ??? | R | Hpy5AEK1ORFTP (77% identity) | ACGT | HpyB130AORF5145P |
| ??? | M | M.HpyKH15ORFKP (98% identity) | ACGT | M.HpyB130AORF5145P |
| 5155 | 164 aa hypothetical protein | |||
| 5150 | DNA (cytosine-5-)-methyltransferase | |||
| ??? | R | HpyGCT17ORFCP (97% identity) | ACNGT | HpyB130AORF5160P |
| 5160 | M | M.HpyB125AORF5080P (97% identity) | M.HpyB130AORF5160P | |
| 5165 | integrase | |||
| 5320 | relaxase | |||
| 5325 | M | M.HpyME32ORF2345P (97% identity) | M.HpyB130AORF5325P | |
| 5330 | translational GTPase TypA | |||
| 5335 | glycosyltransferase 9 family protein | |||
| 5340 | M | M.HpyU431II (98% identity) | ATTAAT | M.HpyB130AORF5340P |
| 5345 | 366 aa hypothetical protein | |||
| 6280 | ATP-dependent chaperone ClpB | |||
| 6285 | M | M.HpyNP09V (100% identity) | CCGG | M.HpyB130AORF6285P |
| 6290 | R | HpyL029VP (95% identity) | CCGG | HpyB130AORF6285P |
| 6295 | 69 aa hypothetical protein | |||
| 6295 | 69 aa hypothetical protein | |||
| 6300 | M | M.Hpy1171ORF4970P (97% identity) | TCGA | M.HpyB130AORF6300P |
| 6305 | exodeoxyribonuclease VII large subunit | |||
| 7145 | alpha-1,2-fucosyltransferase | |||
| 7150 | M | M.Hpyfe21ORF1210P (95% identity) | GATC | M.HpyB130AORF7150P |
| 7155 | 0 aa hypothetical protein | |||
| 7630 | acetyl-CoA carboxylase biotin carboxylase | |||
| 7635 | M | M.HpyI022II (99% identity) | TCNNGA | M.HpyB130AORF7635P |
| 7640 | R | HpyMM09XIIIP (97% identity) | TCNNGA | HpyB130AORF7635P |
| 7645 | Laminin subunit alpha-2 precursor | |||
| 7825 | 144 aa hypothetical protein | |||
| 7830 | M | M.HpySP407XV (94% identity) | M.HpyB130AORF7830P | |
| 7835 | flagellar biosynthesis protein FlgM | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyU102ORF6825P (96% identity) | M.HpyB130AORF40P | |
| 45 | R | HpyH005ORF7445P (92% identity) | HpyB130AORF40P | |
| 50 | 723 aa hypothetical protein | |||
| 1085 | biotin synthase BioB | |||
| 1090 | R | HpySP324ORF6370P (92% identity) | HpyB130AORF1095P | |
| 1095 | M | M.HpyMM01ORF6710P (94% identity) | M.HpyB130AORF1095P | |
| 1100 | DNA/RNA non-specific endonuclease | |||
| 1155 | rod shape-determining protein MreC | |||
| 1160 | R | HpySW13ORF6790P (93% identity) | HpyB130AORF1170P | |
| 1165 | 372 aa hypothetical protein | |||
| 1170 | M | M.HpyLIM8ORF6585P (55% identity) | M.HpyB130AORF1170P | |
| 1175 | restriction endonuclease subunit M | |||