Helicobacter pylori B125A |
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Putative Helicobacter pylori B125A RM systems
Ref: Su,H. et al. Sci Rep 9 (1), 11203 (2019)
REBASE ref # 29574
Complete sequence: 1,643,956 bp
GenBank #: CP024952
REBASE acronym: HpyB125A
Org_num: 37478
All begin CV724_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 465 | formyltetrahydrofolate deformylase | |||
| 470 | S | S.HpyBR25V (97% identity) | S.HpyB125AORF470P | |
| 475 | cagY like protein | |||
| 3250 | type I restriction endonuclease | |||
| 3255 | M | M.HpySW30XIII (95% identity) | M.HpyB125AORF3255P | |
| 3260 | S | S.Hpyfe27ORF4675P (67% identity) | S.HpyB125AORF3255P | |
| 3265 | R | HpyGM9XP (97% identity) | HpyB125AORF3255P | |
| 3270 | hydroxyethylthiazole kinase | |||
| 3545 | cadmium-translocating P-type ATPase | |||
| 3550 | S | S.HpyU417ORF3760P (68% identity) | S.HpyB125AORF3550P | |
| 3555 | outer membrane beta-barrel protein HofF | |||
| 5310 | 631 aa hypothetical protein | |||
| 5315 | R | HpyBR4ORF2210P (86% identity) | CCANNNNNNTC | HpyB125AORF5320P |
| 5320 | M | M.HpyCA26ORF4330P (96% identity) | CCANNNNNNTC | M.HpyB125AORF5320P |
| 5325 | S | S.HpyK051II (98% identity) | CCANNNNNNTC | S.HpyB125AORF5320P |
| 5335 | RNA degradosome polyphosphate kinase | |||
| 8020 | metal-dependent hydrolase | |||
| 8025 | R | HpyGE10ORF7410P (95% identity) | HpyB125AORF8030P | |
| 8030 | M | M.Hpy9310ORFNP (96% identity) | M.HpyB125AORF8030P | |
| 8035 | S | S.HpySW26ORF7465P (86% identity) | S.HpyB125AORF8030P | |
| 8040 | thymidylate synthase (FAD) | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | DEAD/DEAH box helicase | |||
| 55 | RM | HpyNG06ORF7310P (64% identity) | HpyB125AORF55P | |
| 60 | CAAX protease | |||
| 265 | amidophosphoribosyltransferase | |||
| 270 | RM | HpySW12ORF7475P (99% identity) | HpyB125AORF270P | |
| 275 | S | S.HpyI005ORF7035P (62% identity) | S.HpyB125AORF270P | |
| 280 | DNA polymerase I | |||
| 750 | nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | HpyU432ORF6585P (89% identity) | HpyB125AORF755P | |
| 760 | glycosyltransferase 9 family protein | |||
| 770 | glycosyltransferase 9 family protein | |||
| 775 | M | M.HpySW26XIV (98% identity) | M.HpyB125AORF775P | |
| 780 | R | HpyLI25VIP (98% identity) | HpyB125AORF775P | |
| 785 | DNA methyltransferase | |||
| 790 | DNA methyltransferase | |||
| 795 | M | M.HpyB136AORF725P (98% identity) | GANTC | M.HpyB125AORF795P |
| 800 | R | HpySW24IVP (96% identity) | GANTC | HpyB125AORF795P |
| 805 | DNA methyltransferase | |||
| 1530 | serine O-acetyltransferase | |||
| ??? | R | HpySW08IP (72% identity) | CATG | HpyB125AORF1545P |
| 1545 | M | M.HpySW26I (99% identity) | CATG | M.HpyB125AORF1545P |
| 1550 | HAD family hydrolase | |||
| 2015 | flagellar biosynthesis protein FlgM | |||
| 2020 | M | M.HpyR08XVI (94% identity) | M.HpyB125AORF2020P | |
| 2025 | 144 aa hypothetical protein | |||
| 2205 | Laminin subunit alpha-2 precursor | |||
| 2210 | R | HpyU409XIVP (98% identity) | TCNNGA | HpyB125AORF2215P |
| 2215 | M | M.HpySW27ORF5010P (98% identity) | TCNNGA | M.HpyB125AORF2215P |
| 2220 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2945 | ATP-dependent DNA helicase | |||
| 2950 | M | M.HpyU436ORF1995P (96% identity) | GTNNAC | M.HpyB125AORF2950P |
| 2955 | R | HpyU437IXP (100% identity) | GTNNAC | HpyB125AORF2950P |
| 2960 | flagellar hook protein FlgE | |||
| 4120 | 480 aa hypothetical protein | |||
| 4125 | RM | HpyID9ORF3165P (85% identity) | HpyB125AORF4125P | |
| 4130 | glycerol-3-phosphate dehydrogenase | |||
| 4965 | endopeptidase | |||
| ??? | R | HpySW13VP (92% identity) | GTAC | HpyB125AORF4975P |
| ??? | M | M.HpyLI04ORF2335P (98% identity) | GTAC | M.HpyB125AORF4975P |
| 4980 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 5060 | catalase | |||
| ??? | R | HpySP306ORF2220P (73% identity) | HpyB125AORF5070P | |
| ??? | M | M.HpyT014ORF2410P (96% identity) | M.HpyB125AORF5070P | |
| 5075 | restriction endonuclease | |||
| 5070 | DNA (cytosine-5-)-methyltransferase | |||
| 5075 | R | HpySW26ORF2350P (100% identity) | ACNGT | HpyB125AORF5080P |
| 5080 | M | M.HpyB130AORF5160P (97% identity) | M.HpyB125AORF5080P | |
| 5085 | integrase | |||
| 5215 | 50 aa hypothetical protein | |||
| 5220 | M | M.HpySW10VII (42% identity) | M.HpyB125AORF5220P | |
| 5225 | translational GTPase TypA | |||
| 5230 | glycosyltransferase 9 family protein | |||
| 5235 | M | M.HpySW26ORF4530P (98% identity) | ATTAAT | M.HpyB125AORF5235P |
| 5240 | 364 aa hypothetical protein | |||
| 6340 | ATP-dependent chaperone ClpB | |||
| 6345 | M | M.HpyISR2V (99% identity) | CCGG | M.HpyB125AORF6345P |
| 6350 | R | HpyBGR7ORF1340P (82% identity) | CCGG | HpyB125AORF6345P |
| 6355 | 204 aa hypothetical protein | |||
| 6355 | 204 aa hypothetical protein | |||
| 6360 | M | M.HpyP001ORF1385P (98% identity) | TCGA | M.HpyB125AORF6360P |
| 6365 | exodeoxyribonuclease VII large subunit | |||
| 7185 | alpha-1,2-fucosyltransferase | |||
| 7190 | M | M.HpyU415VII (98% identity) | GATC | M.HpyB125AORF7190P |
| 7195 | 327 aa hypothetical protein | |||
| 7390 | sodium/proline symporter PutP | |||
| 7395 | M | M2.HpyL033VP (98% identity) | CCTC | M2.HpyB125AORF7395P |
| 7400 | M | M1.HpySWT11IX (100% identity) | CCTC | M1.HpyB125AORF7395P |
| 7405 | agmatine deiminase | |||
| 7930 | cytochrome C | |||
| 7935 | R | HpySP315XIIIP (98% identity) | TGCA | HpyB125AORF7940P |
| ??? | M | M.HpyHORF1485P (98% identity) | TGCA | M.HpyB125AORF7940P |
| 7950 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyPO02ORF7015P (97% identity) | GWCAY | M.HpyB125AORF40P |
| 50 | R | HpyI014ORF7510P (94% identity) | GWCAY | HpyB125AORF40P |
| 55 | type II restriction endonuclease | |||
| 620 | 0 aa hypothetical protein | |||
| 625 | R | HpyPO108ORF325P (88% identity) | HpyB125AORF630P | |
| 630 | M | M.HpyGE13ORF6615P (96% identity) | M.HpyB125AORF630P | |
| 635 | DNA/RNA non-specific endonuclease | |||
| 685 | rod shape-determining protein MreC | |||
| 690 | R | Hpy166ORF5345P (95% identity) | HpyB125AORF695P | |
| 695 | M | M.HpyC212ORF7620P (92% identity) | M.HpyB125AORF695P | |
| 700 | DNA-binding response regulator | |||