Escherichia coli U1 |
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Putative Escherichia coli U1 RM systems
Ref: Miyazaki,K. et al. unpublished
REBASE ref # 28966
| Sequence length: | GenBank #: | |
| Chromosome: | 5,320,024 bp | CP041359 |
| plasmid unnamed1: | 130,003 bp | CP041358 |
REBASE acronym: EcoU1
Org_num: 35524
All begin E3Z32_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12055 | endoribonuclease SymE | |||
| 12060 | R | Ecost88ORF20845P (100% identity) | GGYANNNNNGTNG | EcoU1IIP |
| 12065 | S | S.Ecost88ORF20845P (100% identity) | GGYANNNNNGTNG | S.EcoU1II |
| 12070 | M | M.Ecost88ORF20845P (100% identity) | GGYANNNNNGTNG | M.EcoU1II |
| 12075 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4950 | DNA-binding transcriptional regulator Fis | |||
| 4955 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.EcoU1ORF4955P |
| 4960 | DUF2556 domain-containing protein | |||
| 5495 | ribulose-phosphate 3-epimerase | |||
| 5500 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoU1Dam |
| 5505 | cell division protein DamX | |||
| 7255 | transposase | |||
| 7260 | R | SflFF80ORF21000P (100% identity) | YGGCCR | EcoU1ORF7265P |
| 7265 | M | M.SflFF80ORF21000P (100% identity) | YGGCCR | M.EcoU1ORF7265P |
| 7270 | integrase | |||
| 23365 | drug/metabolite exporter YedA | |||
| 23370 | V | V.SflFF64DcmP (100% identity) | V.EcoU1DcmP | |
| 23375 | M | M.Ecos135DcmP (100% identity) | CCWGG | M.EcoU1DcmP |
| 23380 | phosphohydrolase | |||
| plasmid unnamed1 | ||||
| 245 | 103 aa hypothetical protein | |||
| 250 | M | M.Sfl2142ORF380P (100% identity) | M.EcoU1ORF250P | |
| 255 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23675 | prepilin-type N-terminal cleavage/methylation | |||
| 23680 | R | Ecos164ORF9105P (100% identity) | ATCACC | EcoU1IP |
| 23685 | M | M.Ecos164ORF9105P (100% identity) | ATCACC | M.EcoU1I |
| 23690 | DUF4102 domain-containing protein | |||