Helicobacter pylori USU101 |
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Putative Helicobacter pylori USU101 RM systems
Ref: Pinyol,J. et al. unpublished
REBASE ref # 29462
Complete sequence: 1,695,835 bp
GenBank #: CP032818
REBASE acronym: HpyUSU101
Org_num: 37172
All begin D8X81_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2475 | RNA degradosome polyphosphate kinase | |||
| 2485 | S | S.HpySP806XIII (99% identity) | S.HpyUSU101ORF2490P | |
| 2490 | M | M.HpyCA26ORF4330P (97% identity) | M.HpyUSU101ORF2490P | |
| 2495 | R | HpyBG7ORF2160P (90% identity) | HpyUSU101ORF2490P | |
| 2500 | DUF115 domain-containing protein | |||
| 4165 | 59 aa hypothetical protein | |||
| 4170 | S | S.HpyB130AORF3245P (80% identity) | S.HpyUSU101ORF4170P | |
| 4175 | cadmium-translocating P-type ATPase | |||
| 4450 | hydroxyethylthiazole kinase | |||
| 4455 | R | HpyBGR8ORF3460P (96% identity) | HpyUSU101ORF4465P | |
| 4460 | S | S.HpyGE1ORF4305P (96% identity) | S.HpyUSU101ORF4465P | |
| 4465 | M | M.HpyF008ORF3025P (96% identity) | M.HpyUSU101ORF4465P | |
| 4470 | type I restriction endonuclease | |||
| 7985 | restriction endonuclease subunit S | |||
| 7990 | S | S.HpyUSU101ORF8000P (100% identity) | S.HpyUSU101ORF7995P | |
| ??? | M | M.HpyAL9VI (95% identity) | M.HpyUSU101ORF7995P | |
| 8005 | R | HpyUSU101ORF8000P (100% identity) | HpyUSU101ORF7995P | |
| 8010 | M48 family peptidase | |||
| 7985 | restriction endonuclease subunit S | |||
| 7990 | S | S.HpyUSU101ORF7995P (100% identity) | S.HpyUSU101ORF8000P | |
| 7995 | 132 aa hypothetical protein | |||
| 8000 | M | M.HpyUSU101ORF7995P (82% identity) | M.HpyUSU101ORF8000P | |
| 8005 | R | HpyUSU101ORF7995P (100% identity) | HpyUSU101ORF8000P | |
| 8010 | M48 family peptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 265 | agmatine deiminase | |||
| 270 | M | M1.HpySP801ORF255P (98% identity) | CCTC | M1.HpyUSU101ORF270P |
| 275 | M | M2.HpyU204VP (98% identity) | CCTC | M2.HpyUSU101ORF270P |
| 280 | R | HpyBG1VP (93% identity) | CCTC | HpyUSU101ORF270P |
| 285 | 0 aa hypothetical protein | |||
| 280 | HNH endonuclease | |||
| 290 | M | M.HpySW08III (62% identity) | M.HpyUSU101ORF290P | |
| 295 | IS200/IS605 family transposase | |||
| 300 | transposase | |||
| 305 | M | M.HpyZ008ORF265P (37% identity) | M.HpyUSU101ORF305P | |
| 310 | R | Hpyfe63ORF7595P (98% identity) | GTSAC | HpyUSU101ORF305P |
| 315 | restriction endonuclease | |||
| 695 | [acyl-carrier-protein] S-malonyltransferase | |||
| 705 | R | HpySWT05XP (96% identity) | GATC | HpyUSU101ORF710P |
| 710 | M | M.HpyNCI26III (96% identity) | GATC | M.HpyUSU101ORF710P |
| 715 | alpha-1,2-fucosyltransferase | |||
| 1545 | exodeoxyribonuclease VII large subunit | |||
| 1550 | M | M.HpyAL7X (97% identity) | TCGA | M.HpyUSU101ORF1550P |
| 1555 | 204 aa hypothetical protein | |||
| 1555 | 204 aa hypothetical protein | |||
| 1560 | R | HpyL006VIIP (92% identity) | CCGG | HpyUSU101ORF1565P |
| 1565 | M | M.HpyC126V (98% identity) | CCGG | M.HpyUSU101ORF1565P |
| 1570 | AAA family ATPase | |||
| 1800 | polysaccharide deacetylase | |||
| 1805 | R | HpyIS6VP (97% identity) | CTNAG | HpyUSU101ORF1810P |
| 1810 | M | M.HpyL015ORF1520P (99% identity) | CTNAG | M.HpyUSU101ORF1810P |
| 1815 | 123 aa hypothetical protein | |||
| 2040 | elongation factor 4 | |||
| 2045 | M | M.HpyTW08ORF1840P (100% identity) | M.HpyUSU101ORF2045P | |
| 2050 | 92 aa hypothetical protein | |||
| 2575 | outer membrane beta-barrel protein | |||
| 2580 | M | M.HpyLI21III (97% identity) | ATTAAT | M.HpyUSU101ORF2580P |
| 2585 | lipopolysaccharide heptosyltransferase family | |||
| 2590 | translational GTPase TypA | |||
| 2595 | M | M.HpyME07IV (100% identity) | ACNGT | M.HpyUSU101ORF2595P |
| 2600 | R | HpyPE03ORF2325P (79% identity) | ACNGT | HpyUSU101ORF2595P |
| 2605 | DNA cytosine methyltransferase | |||
| 2600 | GIY-YIG nuclease family protein | |||
| 2605 | M | M.HpyBGR4ORF2370P (98% identity) | M.HpyUSU101ORF2605P | |
| 2615 | catalase | |||
| 2715 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2720 | M | M.HpyJO7XI (98% identity) | GTAC | M.HpyUSU101ORF2720P |
| 2725 | R | HpyIS2XIIP (98% identity) | GTAC | HpyUSU101ORF2720P |
| 2730 | M23 family metallopeptidase | |||
| 3545 | (Fe-S)-binding protein | |||
| 3550 | RM | HpyPU009ORF2935P (88% identity) | HpyUSU101ORF3550P | |
| 3555 | 65 aa hypothetical protein | |||
| 4760 | flagellar hook protein FlgE | |||
| 4765 | R | HpyR11XP (96% identity) | GTNNAC | HpyUSU101ORF4770P |
| 4770 | M | M.HpyI008X (96% identity) | GTNNAC | M.HpyUSU101ORF4770P |
| 4775 | ATP-dependent helicase | |||
| 5540 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5545 | M | M.HpyLI12II (98% identity) | TCNNGA | M.HpyUSU101ORF5545P |
| 5550 | R | HpyP108XIIIP (100% identity) | TCNNGA | HpyUSU101ORF5545P |
| 5555 | Laminin subunit alpha-2 precursor | |||
| 5740 | 144 aa hypothetical protein | |||
| 5745 | M | M.HpyNP13XIV (95% identity) | GCGC | M.HpyUSU101ORF5745P |
| 5750 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6220 | HAD family hydrolase | |||
| 6225 | M | M.Hpyoh1ORF955P (98% identity) | CATG | M.HpyUSU101ORF6225P |
| 6230 | IceA2 protein | |||
| 6980 | adenine specific DNA methyltransferase | |||
| 6985 | R | HpyR03IVP (96% identity) | HpyUSU101ORF6990P | |
| 6990 | M | M.HpyG008IV (97% identity) | M.HpyUSU101ORF6990P | |
| 6995 | DNA methyltransferase | |||
| 7660 | DNA polymerase I | |||
| 7665 | S | S.HpyBR9ORF6785P (96% identity) | S.HpyUSU101ORF7670P | |
| 7670 | RM | HpySP17ORF7535P (97% identity) | HpyUSU101ORF7670P | |
| 7675 | ComF family protein | |||
| 7800 | YjgP/YjgQ family permease | |||
| 7805 | M | M2.HpyP108III (99% identity) | CCATC | M1.HpyUSU101ORF7805P |
| 7810 | M | M2.HpyPE16VI (99% identity) | CCATC | M2.HpyUSU101ORF7805P |
| 7815 | R | HpyCH114IIIP (97% identity) | CCATC | HpyUSU101ORF7805P |
| 7820 | outer membrane protein | |||
| 7895 | DUF4065 domain-containing protein | |||
| 7900 | RM | HpySW31XVII (90% identity) | HpyUSU101ORF7900P | |
| 7905 | 716 aa hypothetical protein | |||
| 8085 | 68 aa hypothetical protein | |||
| 8090 | M | M.HpySW27VI (99% identity) | TGCA | M.HpyUSU101ORF8090P |
| 8095 | R | HpyL024VIP (99% identity) | TGCA | HpyUSU101ORF8090P |
| 8100 | cytochrome c1 | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3160 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 3165 | R | HpyCOL308ORF2885P (94% identity) | HpyUSU101ORF3170P | |
| 3170 | M | M.Hpy476CORFGP (97% identity) | M.HpyUSU101ORF3170P | |
| 3175 | 54 aa hypothetical protein | |||
| 7050 | DNA-binding response regulator | |||
| 7055 | M | M.HpyNY40ORF357P (93% identity) | M.HpyUSU101ORF7055P | |
| 7060 | R | HpyBGR6ORF6565P (92% identity) | HpyUSU101ORF7055P | |
| 7065 | rod shape-determining protein MreC | |||
| 7115 | DNA/RNA non-specific endonuclease | |||
| 7120 | M | M.HpyBR4ORF6580P (94% identity) | M.HpyUSU101ORF7120P | |
| 7125 | R | HpyP110ORF6540P (95% identity) | HpyUSU101ORF7120P | |
| 7130 | 68 aa hypothetical protein | |||
| 7905 | 716 aa hypothetical protein | |||
| 7910 | R | HpyL026ORF7400P (94% identity) | HpyUSU101ORF7915P | |
| ??? | M | M.HpyT008ORF7150P (95% identity) | M.HpyUSU101ORF7915P | |
| 7925 | ATP-dependent DNA helicase RecG | |||