Helicobacter pylori 173-A-EK1 |
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Putative Helicobacter pylori 173-A-EK1 RM systems
Ref: Ailloud,F. et al. Nat Commun 10 (1), 2273 (2019)
REBASE ref # 28879
Complete sequence: 1,690,720 bp
GenBank #: CP032903
REBASE acronym: Hpy173A
Org_num: 34971
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpyLI26ORF4280P (92% identity) | M.Hpy173AORFHP | |
| ??? | S | S.HpyLI12ORF4060P (98% identity) | S.Hpy173AORFHP | |
| ??? | R | HpyBGR7ORF4380P (96% identity) | Hpy173AORFHP | |
| ??? | S | S.HpyMM10XII (94% identity) | S.Hpy173AORFXP | |
| ??? | R | HpySP414ORF2150P (91% identity) | Hpy173AORFTP | |
| ??? | M | M.HpyR10ORF2150P (94% identity) | M.Hpy173AORFTP | |
| ??? | S | S.HpySP105ORF2100P (98% identity) | S.Hpy173AORFTP | |
| ??? | R | HpyISR9VIIP (94% identity) | Hpy173AORFNP | |
| ??? | M | M.HpyLI26ORF7520P (95% identity) | M.Hpy173AORFNP | |
| ??? | S | S.HpySWT12ORF3615P (96% identity) | S.Hpy173AORFNP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | 967 aa hypothetical protein | |||
| ??? | RM | HpySP601XVII (84% identity) | Hpy173AORFD1P | |
| ??? | R | HpyT003IVP (87% identity) | Hpy173AORFAP | |
| ??? | RM | HpyI009ORF7380P (98% identity) | Hpy173AORFBP | |
| ??? | S | S.HpyI009ORF7380P (95% identity) | S.Hpy173AORFBP | |
| ??? | RM | HpyAR7ORF485P (88% identity) | Hpy173AORFZP | |
| ??? | site-specific DNA-methyltransferase | |||
| ??? | 1122 aa hypothetical protein HMPREF1402_00656 | |||
| ??? | M | M.HpyR11IX (97% identity) | GANTC | M.Hpy173AORFA1P |
| ??? | R | HpyL028IIIP (95% identity) | GANTC | Hpy173AORFA1P |
| ??? | M | M.HpyMTT60ORFFP (96% identity) | CATG | M.Hpy173AORFDP |
| ??? | R | HpyF17I (99% identity) | TCNGA | Hpy173AORFEP |
| ??? | M | M.HpyKH18ORFCP (99% identity) | TCNGA | M.Hpy173AORFEP |
| ??? | M | M.HpyU106X (96% identity) | GCGC | M.Hpy173AORFFP |
| ??? | R | HpyIS7XIP (100% identity) | TCNNGA | Hpy173AORFGP |
| ??? | M | M.HpyC123IX (100% identity) | TCNNGA | M.Hpy173AORFGP |
| ??? | M | M.HpyPOR109IX (91% identity) | M.Hpy173AORFYP | |
| ??? | R | HpyISR10IXP (96% identity) | Hpy173AORFYP | |
| ??? | M | M.Hpyfe21ORF4730P (100% identity) | CGWCG | M.Hpy173AORFIP |
| ??? | R | HpySP507IVP (100% identity) | CGWCG | Hpy173AORFIP |
| ??? | R | HpySP610ORF3605P (94% identity) | Hpy173AORFJP | |
| ??? | M | M.HpySP610ORF3605P (99% identity) | M.Hpy173AORFJP | |
| ??? | RM | DEAD/DEAH box helicase | Hpy173AORFWBP | |
| ??? | RM | HpyPO104ORF2700P (54% identity) | Hpy173AORFWAP | |
| ??? | R | HpyC61XIIIP (96% identity) | GTAC | Hpy173AORFKP |
| ??? | M | M.Hpy479CORFEP (96% identity) | GTAC | M.Hpy173AORFKP |
| ??? | M | M.Hpy135ORF2365P (45% identity) | M.Hpy173AORFUP | |
| ??? | modification methylase VspI domain protein | |||
| ??? | DNA cytosine methyltransferase | |||
| ??? | M | M.HpyG002II (97% identity) | ATTAAT | M.Hpy173AORFVP |
| ??? | M | M.HpyU410III (98% identity) | M.Hpy173AORFRP | |
| ??? | R | HpyME09IIP (72% identity) | Hpy173AORFRP | |
| ??? | DNA -methyltransferase | |||
| ??? | 160 aa hypothetical protein HMPREF1415_00409 | |||
| ??? | M | M.HpyB38ORF265P (97% identity) | TCGA | M.Hpy173AORFSP |
| ??? | M | M.HpySP316VIII (98% identity) | GATC | M.Hpy173AORFLP |
| ??? | R | HpyU001VIP (96% identity) | GATC | Hpy173AORFLP |
| ??? | DNA -methyltransferase | |||
| ??? | R | HpyP005VIIP (69% identity) | Hpy173AORFPP | |
| ??? | hypothetical protein | |||
| ??? | M | DNA -methyltransferase | M.Hpy173AORFOP | |
| ??? | hypothetical protein | |||
| ??? | hypothetical protein | |||
| ??? | R | hypothetical protein | CCTC | Hpy173AORFQP |
| ??? | DNA methyltransferase | |||
| ??? | M | 232 aa hypothetical protein | CCTC | M2.Hpy173AORFQP |
| ??? | M | M.HpyPORF1523P (97% identity) | M.Hpy173AORFMP | |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpyG006ORF7280P (94% identity) | M.Hpy173AORFC1P | |
| ??? | R | HpyGRE040ORF7400P (92% identity) | Hpy173AORFC1P | |
| ??? | class I SAM-dependent DNA methyltransferase | |||
| ??? | R | HpyIR9XIIIP (90% identity) | Hpy173AORFCP | |
| ??? | M | M.HpyGE12ORF6970P (95% identity) | M.Hpy173AORFCP | |
| ??? | R | HpySW21ORF6040P (94% identity) | Hpy173AORFB1P | |
| ??? | M | M.HpyP002ORF6550P (93% identity) | M.Hpy173AORFB1P | |