Helicobacter pylori 478-A-EK1 |
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Putative Helicobacter pylori 478-A-EK1 RM systems
Ref: Ailloud,F. et al. unpublished
REBASE ref # 28880
Complete sequence: 1,628,623 bp
GenBank #: CP032899
REBASE acronym: Hpy478A
Org_num: 34989
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | S | S.HpyG001ORF7395P (98% identity) | S.Hpy478AORFA1P | |
| ??? | M | type I restriction-modification system, M subunit | M.Hpy478AORFA1P | |
| ??? | M | M.HpySP314ORF7540P (71% identity) | M.Hpy478AORFZP | |
| ??? | R | HpyLI23ORF7535P (95% identity) | Hpy478AORFZP | |
| ??? | hypothetical protein | |||
| ??? | S | S.HpySWT06ORF2365P (98% identity) | S.Hpy478AORFXP | |
| ??? | M | M.HpyF014ORF2235P (96% identity) | M.Hpy478AORFXP | |
| ??? | R | HpyNP01ORF2315BP (64% identity) | Hpy478AORFXP | |
| ??? | S | S.HpyCHN10ORF2560P (97% identity) | S.Hpy478AORFTP | |
| ??? | R | HpyJ001ORF2575P (96% identity) | Hpy478AORFRP | |
| ??? | S | S.HpyG004ORF3960P (97% identity) | S.Hpy478AORFRP | |
| ??? | M | M.Hpy1198ORF1980P (96% identity) | M.Hpy478AORFRP | |
| ??? | DNA cytosine methyltransferase | |||
| ??? | S | S.HpyU101XIII (97% identity) | S.Hpy478AORFLP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | DEAD/DEAH box helicase | |||
| ??? | RM | HpyCOL5ORF7425P (84% identity) | Hpy478AORFC1P | |
| ??? | RM | HpyL018ORF7140P (98% identity) | Hpy478AORFAP | |
| ??? | S | S.HpyL009ORF7080P (95% identity) | S.Hpy478AORFAP | |
| ??? | M | M.HpyU003XIV (98% identity) | TGCA | M.Hpy478AORFBP |
| ??? | R | Hpy444A6ORFSP (99% identity) | TGCA | Hpy478AORFBP |
| ??? | M | M1.HpySP604V (99% identity) | CCTC | M1.Hpy478AORFYP |
| ??? | M | M2.HpyME04ORF250P (96% identity) | CCTC | M2.Hpy478AORFYP |
| ??? | M | M.HpyJO6X (97% identity) | GATC | M.Hpy478AORFCP |
| ??? | DNA -methyltransferase | |||
| ??? | R | HpyIS11VP (92% identity) | CCGG | Hpy478AORFEP |
| ??? | M | M.HpyP109III (99% identity) | CCGG | M.Hpy478AORFEP |
| ??? | M | M.HpyF006VIII (98% identity) | TCGA | M.Hpy478AORFDP |
| ??? | endonuclease MjaVIP | |||
| ??? | R | Hpy14039ORFIP (98% identity) | CTNAG | Hpy478AORFFP |
| ??? | M | M.HpySP806VI (99% identity) | CTNAG | M.Hpy478AORFFP |
| ??? | M | M.Hpyoh1ORF4535P (99% identity) | M.Hpy478AORFGP | |
| ??? | modification methylase VspI domain protein | |||
| ??? | M | M.Hpy26AEK1ORFNP (97% identity) | M.Hpy478AORFWP | |
| ??? | R | Hpyfe99ORF5080P (93% identity) | Hpy478AORFWP | |
| ??? | M | M.HpyG002II (97% identity) | ATTAAT | M.Hpy478AORFVP |
| ??? | DNA cytosine methyltransferase | |||
| ??? | M | M.Hpy20AORFGP (97% identity) | GTAC | M.Hpy478AORFUP |
| ??? | R | HpyCA8IXP (75% identity) | GTAC | Hpy478AORFUP |
| ??? | M | M.Hpyfe62ORF3865P (99% identity) | CCNNGG | M.Hpy478AORFHP |
| ??? | R | HpySW36VIP (99% identity) | CCNNGG | Hpy478AORFHP |
| ??? | type I restriction-modification system subunit M | |||
| ??? | M | M.HpyR09ORF4225P (99% identity) | M.Hpy478AORFSP | |
| ??? | R | HpyS64ORFBP (98% identity) | Hpy478AORFSP | |
| ??? | R | HpyGRE018XIVP (96% identity) | GTNNAC | Hpy478AORFIP |
| ??? | M | M.HpyLI20XIII (92% identity) | GTNNAC | M.Hpy478AORFIP |
| ??? | M | M.HpyIS8XIII (98% identity) | TCNNGA | M.Hpy478AORFQP |
| ??? | R | HpyC001VIIIP (98% identity) | TCNNGA | Hpy478AORFQP |
| ??? | M | M.HpySW19XIV (96% identity) | M.Hpy478AORFJP | |
| ??? | M | M.HpyT006I (97% identity) | CATG | M.Hpy478AORFPP |
| ??? | R | Hpy5AEK1ORFMP (95% identity) | CATG | Hpy478AORFPP |
| ??? | R | HpyL018VIIP (96% identity) | GANTC | Hpy478AORFNP |
| ??? | M | M.HpyLI28V (99% identity) | GANTC | M.Hpy478AORFNP |
| ??? | hypothetical protein | |||
| ??? | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyPO11ORF6675P (90% identity) | Hpy478AORFOP | |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpySW17ORF7110P (96% identity) | M.Hpy478AORFB1P | |
| ??? | R | HpyT009ORF7355P (94% identity) | Hpy478AORFB1P | |
| ??? | hypothetical protein | |||
| ??? | M | M.HpyI015ORF6960P (94% identity) | M.Hpy478AORFMP | |
| ??? | R | HpyF021ORF6530P (94% identity) | Hpy478AORFMP | |
| ??? | M | M.Hpy207ORF2285P (95% identity) | M.Hpy478AORFKP | |
| ??? | R | HpyT001ORF6785P (91% identity) | Hpy478AORFKP | |