Xanthomonas campestris pv. campestris Xcc8004_Xcc2 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Xanthomonas campestris pv. campestris Xcc8004_Xcc2 RM systems
Ref: Torres-Cortes,G. et al. unpublished
REBASE ref # 29043
Complete sequence: 5,161,275 bp
GenBank #: CP029484
REBASE acronym: Xcacc2
Org_num: 35736
All begin DFG54_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2300 | 121 aa hypothetical protein | |||
| 2305 | R | XcaXc86ORFCP (100% identity) | Xcacc2ORF2325P | |
| 2310 | S | S.XcaXca5ORFBP (100% identity) | S.Xcacc2ORF2325P | |
| 2315 | anticodon nuclease | |||
| 2320 | DNA-binding protein | |||
| 2325 | M | M.XcaXca5ORFBP (100% identity) | M.Xcacc2ORF2325P | |
| 2330 | aminodeoxychorismate/anthranilate synthase | |||
| 6110 | M48 family peptidase | |||
| 6115 | R | XcaXca5ORFCP (100% identity) | CAAGNNNNNCTTA | Xcacc2ORF6130P |
| 6120 | S | S.XcaYORFCP (100% identity) | CAAGNNNNNCTTA | S.Xcacc2ORF6130P |
| 6125 | damage-inducible protein D | |||
| 6130 | M | M.XcaYORFCP (78% identity) | CAAGNNNNNCTTA | M.Xcacc2ORF6130P |
| 6135 | 198 aa hypothetical protein | |||
| 16535 | 98 aa hypothetical protein | |||
| 16540 | R | XcaXca5ORFDP (100% identity) | GAGNNNNNNGTGC | Xcacc2ORF16555P |
| 16545 | S | S.XcaYORFFP (100% identity) | GAGNNNNNNGTGC | S.Xcacc2ORF16555P |
| 16550 | hydroxyacid dehydrogenase | |||
| 16555 | M | M.XcaXca5ORFDP (100% identity) | GAGNNNNNNGTGC | M.Xcacc2ORF16555P |
| 16560 | Mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10645 | 70 aa hypothetical protein | |||
| 10650 | M | M.Xca8004ORF2063P (100% identity) | M.Xcacc2ORF10650P | |
| 10655 | 81 aa hypothetical protein | |||
| 10725 | ImmA/IrrE family metallo-endopeptidase | |||
| 10730 | RM | Xca8004ORF2076P (100% identity) | Xcacc2ORF10730P | |
| 10735 | DEAD/DEAH box helicase | |||
| 20490 | 0 aa hypothetical protein | |||
| 20495 | R | XcaXc86ORFAP (100% identity) | Xcacc2ORF20495P | |
| 20500 | IS3-like element IS1404 family transposase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 910 | Fic family protein | |||
| 915 | M | M.XcaXca5ORFAP (100% identity) | GCCAGG | M.Xcacc2ORF915P |
| 920 | R | XcaXca5ORFAP (100% identity) | GCCAGG | Xcacc2ORF915P |
| 925 | haloalkane dehalogenase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7015 | 71 aa hypothetical protein | |||
| 7020 | R | XcaXc86McrBP (100% identity) | Xcacc2McrBP | |
| 7025 | R | XcaXc86McrCP (100% identity) | Xcacc2McrCP | |
| 7030 | sensor histidine kinase | |||
| 16555 | SAM-dependent DNA methyltransferase | |||
| 16560 | R | XcaXca5MrrP (100% identity) | Xcacc2MrrP | |
| 16565 | type II toxin-antitoxin system RelE/ParE family | |||