Escherichia coli DH1 (N. Ono) |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli DH1 (N. Ono) RM systems
Ref: Ono,N. et al. unpublished
REBASE ref # 12286
Complete sequence: 4,621,430 bp
GenBank #: AP012030
REBASE acronym: EcoDH1J
Org_num: 6497
All begin ECDH1ME8569_, ECDH1ME8569_o
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4205 | conserved protein | |||
| 4206 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoDH1JORF4207P |
| 4207 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoDH1JORF4207P |
| ??? | R | Esp17TGCORF18925P (100% identity) | AACNNNNNNGTGC | EcoDH1JORF4207P |
| 4208 | methylated adenine and cytosine restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1898 | 306 aa hypothetical protein | |||
| 1899 | V | V.SflFF64DcmP (100% identity) | V.EcoDH1JDcmP | |
| 1900 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoDH1JDcmP |
| 1901 | 231 aa hypothetical protein | |||
| 3147 | DNA-binding protein Fis | |||
| 3148 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoDH1JORF3148P |
| 3149 | predicted membrane protein | |||
| 3265 | ribulose-phosphate 3-epimerase | |||
| 3266 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoDH1JDamP |
| 3267 | 428 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1094 | e14 prophage; site-specific DNA recombinase | |||
| 1095 | R | SsoSE61ORF22640P (100% identity) | YCGR | EcoDH1JMcrAP |
| 1096 | isocitrate dehydrogenase | |||
| 4202 | conserved protein, truncated | |||
| 4203 | R | SenHNK130McrCP (100% identity) | EcoDH1JMcrCP | |
| 4204 | R | SenHNK130McrBP (100% identity) | EcoDH1JMcrBP | |
| 4205 | conserved protein | |||
| 84 | unnamed protein product | |||
| 4208 | R | SenHNK130MrrP (100% identity) | EcoDH1JMrrP | |
| 4209 | GTP-binding protein YjiA | |||