Compost metagenome |
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Putative Compost metagenome RM systems
Ref: Egelkamp,R. et al. unpublished
REBASE ref # 28708
GenBank #: RCUI00000000
REBASE acronym: CmeD
Org_num: 34654
All begin D3C77_, ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | Squ12ORF13810P (53% identity) | CmeDORF173510P | |
| 173500 | S | S.Kpn9968ORFAP (38% identity) | S.CmeDORF173510P | |
| 173510 | M | M.ApoBE5ORFBP (97% identity) | M.CmeDORF173510P | |
| 173520 | Mrr restriction system protein | |||
| ??? | M | M.Pxi51270ORF1133P (59% identity) | M.CmeDORFMP | |
| 235610 | Helix-turn-helix domain protein | |||
| ??? | R | PspHL1ORF3763P (84% identity) | CmeDORFOP | |
| 272220 | EcoKI restriction-modification system protein | |||
| ??? | HsdR family type I site-specific deoxyribonuclease | |||
| 272220 | S | S2.KpnS1315ORF7160P (52% identity) | S.CmeDORF272220P | |
| ??? | M | M.AmeWSORF3277P (88% identity) | M.CmeDORFAP | |
| 330150 | S | S1.Aca429865ORF9030P (96% identity) | S.CmeDORFAP | |
| ??? | R | type I restriction endonuclease subunit R | CmeDORF334400P | |
| 334390 | S | S.CspKK10ORF24420P (51% identity) | S.CmeDORF334400P | |
| 334400 | M | M.Pfl270ORF11940P (17% identity) | M.CmeDORF334400P | |
| ??? | S | S.PspS19ORF3610P (36% identity) | S.CmeDORF254160P | |
| 254160 | M | M.PspS19ORF3610P (97% identity) | M.CmeDORF254160P | |
| 254170 | 56 aa hypothetical protein | |||
| 160950 | M | M.Pce2981ORF4603P (34% identity) | M.CmeDORF160950P | |
| 160960 | S | S.PspTAD18ORF1552P (60% identity) | S.CmeDORF160950P | |
| 160970 | R | Psp2300ORF4100P (96% identity) | CmeDORF160950P | |
| 160980 | Mrr restriction system protein | |||
| 169970 | R | Pto511ORF28275P (91% identity) | CmeDORF169970P | |
| 169980 | 237 aa hypothetical protein | |||
| 259390 | R | type I restriction enzyme EcoKI subunit R | CmeDORF259400P | |
| 259400 | M | M.Pme10692ORF1187P (86% identity) | M.CmeDORF259400P | |
| ??? | S | S.PkhODT83ORF18125P (42% identity) | S.CmeDORF259400P | |
| 297480 | M | type I restriction enzymeP M protein | M.CmeDORF297480P | |
| 297490 | S | S.PpuR51ORF1110P (46% identity) | S.CmeDORF297480P | |
| 297500 | 52 aa hypothetical protein | |||
| 259330 | M | M1.Psy1524ORFAP (89% identity) | M1.CmeDORF259330P | |
| 259340 | 59 aa hypothetical protein | |||
| 259350 | M | M2.Psy1524ORFAP (91% identity) | M2.CmeDORF259330P | |
| ??? | S | S.Vch98481ORF1952P (26% identity) | S.CmeDORF259330P | |
| 248190 | Transcriptional regulatory protein ZraR | |||
| ??? | R | Pps3667ORF501P (90% identity) | CmeDORFNP | |
| 210670 | Prophage CP4-57 integrase | |||
| 210680 | M | M.Pto511ORF28275P (96% identity) | M.CmeDORF210680P | |
| 210690 | S | S.Pto511ORF28275P (89% identity) | S.CmeDORF210680P | |
| ??? | R | type I restriction endonuclease subunit R | CmeDORF210680P | |
| 282470 | M | M.Aja29ORF2199P (95% identity) | M.CmeDORF282470P | |
| ??? | S | S2.AbrPbN1ORF17860P (67% identity) | S.CmeDORF282470P | |
| 238420 | R | Ppu33019ORF210P (96% identity) | CmeDORF238420P | |
| 238430 | 236 aa hypothetical protein | |||
| 272620 | M | M.Pst49ORFEP (92% identity) | M.CmeDORF272620P | |
| ??? | S | S.Sma133ORF19470P (73% identity) | S.CmeDORF272620P | |
| 220630 | 93 aa hypothetical protein | |||
| 220640 | S | S2.Ssp0042ORF670P (68% identity) | S1.CmeDORF220650P | |
| 220650 | M | M.Pfl10392ORF364P (95% identity) | M.CmeDORF220650P | |
| 220660 | S | S.Pma21607ORF1216P (56% identity) | S2.CmeDORF220650P | |
| 220670 | 104 aa hypothetical protein | |||
| ??? | R | type I restriction endonuclease subunit R | CmeDORF220650P | |
| 107310 | M | M.Psy34881ORF20670P (96% identity) | M.CmeDORF107310P | |
| 107320 | 380 aa hypothetical protein | |||
| 107330 | S | S.Psy34881ORF20670P (88% identity) | S.CmeDORF107310P | |
| 107340 | R | Psy34881ORF20670P (95% identity) | CmeDORF107310P | |
| 107350 | 63 aa hypothetical protein | |||
| 89500 | DNA primase | |||
| 89510 | M | M.AmeR118ORF18625P (96% identity) | M.CmeDORF89510P | |
| 89520 | Abi-like protein | |||
| 89530 | S | S.Kqu3ZSLORF5040P (56% identity) | S.CmeDORF89510P | |
| 89540 | 318 aa hypothetical protein | |||
| 89550 | 154 aa hypothetical protein | |||
| 89560 | 135 aa hypothetical protein | |||
| 89570 | 149 aa hypothetical protein | |||
| 89580 | R | AmeR118ORF18625P (99% identity) | CmeDORF89510P | |
| 89590 | 58 aa hypothetical protein | |||
| 245130 | 287 aa hypothetical protein | |||
| 245140 | R | AmeR126ORFEP (69% identity) | CmeDORF245140P | |
| 230740 | R | AveC4IIP (97% identity) | CmeDORFLP | |
| ??? | M | M.Ata24683ORFAP (81% identity) | M.CmeDORFLP | |
| ??? | M | M.Pfl270ORF11940P (88% identity) | M.CmeDORFPP | |
| 189600 | 224 aa hypothetical protein | |||
| 189610 | R | Pxi51270ORF1133P (93% identity) | CmeDORF189630P | |
| 189620 | S | S.AspPMMR2ORFAP (36% identity) | S.CmeDORF189630P | |
| ??? | M | M.Pxi51270ORF1133P (21% identity) | M.CmeDORF189630P | |
| 46420 | 148 aa hypothetical protein | |||
| 46430 | M | M.Aca5ORF12055P (97% identity) | M.CmeDORF46430P | |
| 46440 | S | S.RspSA1ORF5655P (43% identity) | S.CmeDORF46430P | |
| 46450 | 497 aa hypothetical protein | |||
| 110490 | Mrr restriction system protein | |||
| 110500 | M | M.AhdII (87% identity) | M.CmeDORF110500P | |
| 110510 | S | S.PaeLo166ORF25600P (52% identity) | S.CmeDORF110500P | |
| 110520 | 389 aa hypothetical protein | |||
| 110530 | Abi-like protein | |||
| 110540 | R | AhdIIP (96% identity) | CmeDORF110500P | |
| 116020 | 386 aa hypothetical protein | |||
| 116030 | R | TspSWB20ORF837P (81% identity) | CmeDORF116060P | |
| 116050 | S | S.Psy74ORF9420P (34% identity) | S.CmeDORF116060P | |
| 116060 | M | M.AteLMJII (78% identity) | M.CmeDORF116060P | |
| 116070 | Helix-turn-helix domain protein | |||
| 79150 | ATP-dependent helicase HepA | |||
| 79160 | R | PpuR51ORF17905P (99% identity) | CmeDORF79180P | |
| 79170 | 277 aa hypothetical protein | |||
| 79180 | M | M.PfuBORF2680P (98% identity) | M.CmeDORF79180P | |
| 79190 | S | S.PpuN1RORF304P (69% identity) | S.CmeDORF79180P | |
| 79200 | 656 aa hypothetical protein | |||
| 46470 | RecBCD enzyme subunit RecD | |||
| 46480 | R | Aja3036ORF1640P (99% identity) | CmeDORF46480P | |
| 46490 | 237 aa hypothetical protein | |||
| 45470 | Biofilm operon icaADBC HTH-type negative | |||
| 45480 | S | S.Prh38ORF1473P (99% identity) | S.CmeDORF45490P | |
| 45490 | M | M.Prh38ORF1473P (100% identity) | M.CmeDORF45490P | |
| 45500 | R | PsyALF3ORF21590P (99% identity) | CmeDORF45490P | |
| 45510 | 277 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M2.PciT10ORF28505P (58% identity) | M.CmeDORFRP | |
| 1 | M | M.PveT1ORF23565P (77% identity) | M.CmeDORFFP | |
| ??? | M | M.CmeDORF269580P (84% identity) | M.CmeDORFSP | |
| 249220 | Mor transcription activator family protein | |||
| 249230 | M | M.AhdIII (92% identity) | GCCGGC | M.CmeDORF249230P |
| 249240 | R | Asp1418ORF17110P (94% identity) | GCCGGC | CmeDORF249230P |
| 249250 | Peptidoglycan domain protein | |||
| 396530 | M | M.Bsp7484ORFBP (56% identity) | M.CmeDORF396530P | |
| ??? | R | R1.Bsp7484ORFBP (25% identity) | CmeDORF396530P | |
| 326770 | M | M.Tsp970ORF4585P (73% identity) | M.CmeDORF326770P | |
| 326780 | DNA-invertase from lambdoid prophage | |||
| 396610 | M | M.Psp5639ORFBP (66% identity) | M.CmeDORF396610P | |
| 292360 | M | M.PspRT22ORF9635P (82% identity) | M.CmeDORF292360P | |
| 292370 | SOS response-associated peptidase YedK | |||
| ??? | M | M.Ppi75ORF5110AP (53% identity) | M.CmeDORF282070P | |
| 166190 | RM | Pbr002ORF20525P (81% identity) | CmeDORF166190P | |
| 166200 | 122 aa hypothetical protein | |||
| 374160 | M | M.Psp21032ORF17670P (94% identity) | M.CmeDORF374160P | |
| 374170 | 181 aa hypothetical protein | |||
| 394250 | SOS response-associated peptidase YedK | |||
| 394260 | M | M.Psp1212ORF8365P (80% identity) | M.CmeDORF394260P | |
| 414360 | M | M.PpuAA7ORFCP (97% identity) | M.CmeDORF414360P | |
| 247080 | M | M.Pas71ORF8690P (93% identity) | M.CmeDORF247080P | |
| 247090 | 232 aa hypothetical protein | |||
| 354100 | 129 aa hypothetical protein | |||
| 354110 | M | M.PspM2ORF15935P (97% identity) | M.CmeDORF354110P | |
| 354120 | 128 aa hypothetical protein | |||
| 291810 | R | PspMM211ORF520P (77% identity) | CmeDORF291820P | |
| 291820 | M | M.PspMM211ORF520P (81% identity) | M.CmeDORF291820P | |
| 291830 | V | V.PspCCA1ORFEP (80% identity) | V.CmeDORF291820P | |
| 219880 | V | V.PspSCB32ORFAP (58% identity) | V.CmeDORF219910P | |
| 219890 | 344 aa hypothetical protein | |||
| 219900 | 61 aa hypothetical protein | |||
| 219910 | M | M.PspSCB32ORFAP (79% identity) | M.CmeDORF219910P | |
| 219920 | 90 aa hypothetical protein | |||
| 459470 | M | C-5 cytosine-specific DNA methylase | M.CmeDORF459470P | |
| 197900 | V | V.AspNIH7ORF18255P (78% identity) | V.CmeDORF197910P | |
| 197910 | M | M.Ata24683ORFBP (95% identity) | M.CmeDORF197910P | |
| 197920 | 239 aa hypothetical protein | |||
| 280160 | 355 aa hypothetical protein | |||
| 280170 | M | M.Psp170CORF25655P (99% identity) | M.CmeDORF280170P | |
| 402670 | 119 aa hypothetical protein | |||
| 402680 | M | M.Aca8LMORF7750P (91% identity) | M.CmeDORF402680P | |
| ??? | M | M.Ppa1880ORF10500P (58% identity) | M.CmeDORFQP | |
| 295750 | 83 aa hypothetical protein | |||
| 269570 | 139 aa hypothetical protein | |||
| 269580 | M | M.CmeDORF275650P (94% identity) | M.CmeDORF269580P | |
| 269590 | 77 aa hypothetical protein | |||
| 176780 | M | M.Psy5067ORF19025P (94% identity) | M.CmeDORF176780P | |
| 176790 | R | PspMR02ORF14245P (91% identity) | CmeDORF176780P | |
| 176800 | DNA-invertase from lambdoid prophage | |||
| 255500 | M | M.PmadORF4060P (36% identity) | M.CmeDORF255500P | |
| 255520 | 260 aa hypothetical protein | |||
| 394400 | M | M.PspAN1ORF10260P (59% identity) | M.CmeDORF394400P | |
| 364990 | M | M.Pwa21022ORF16935P (97% identity) | M.CmeDORF364990P | |
| 253680 | 266 aa hypothetical protein | |||
| 253690 | M | M2.PalOT69ORF11160P (50% identity) | M.CmeDORF253690P | |
| 253700 | 129 aa hypothetical protein | |||
| 226370 | 85 aa hypothetical protein | |||
| 226380 | M | M1.Pbr002ORF20525P (81% identity) | M1.CmeDORF226380P | |
| ??? | M | M2.Pbr002ORF20525P (72% identity) | M2.CmeDORF226380P | |
| 251400 | 128 aa hypothetical protein | |||
| 251410 | M | M.CmeDORF354110P (95% identity) | M.CmeDORF251410P | |
| 251420 | 147 aa hypothetical protein | |||
| 145710 | Helix-turn-helix domain protein | |||
| 145720 | M | M.PveR4ORFCP (97% identity) | M.CmeDORF145720P | |
| 145730 | V | V.PveR4ORFCP (83% identity) | V.CmeDORF145720P | |
| 145740 | RNA polymerase-associated protein RapA | |||
| 210440 | 75 aa hypothetical protein | |||
| 210460 | M | M.Ppu12077ORF8290P (89% identity) | M.CmeDORF210460P | |
| 210470 | 62 aa hypothetical protein | |||
| 212750 | 76 aa hypothetical protein | |||
| 212760 | M | M.BspBH3ORF7775P (81% identity) | M.CmeDORF212760P | |
| 212770 | Phage portal protein | |||
| 54570 | peptidoglycan binding domain protein | |||
| 54580 | R | Pya14026ORF4095P (71% identity) | CmeDORF54600P | |
| 54590 | 64 aa hypothetical protein | |||
| 54600 | M | M.Ppu2527ORFAP (89% identity) | M.CmeDORF54600P | |
| ??? | V | V.Pya14026ORF4095P (81% identity) | V.CmeDORF54600P | |
| 54620 | 342 aa hypothetical protein | |||
| 168770 | Transposase DDE domain protein | |||
| 168780 | M | M.Bco4ORF57380P (59% identity) | M.CmeDORF168780P | |
| 168790 | 202 aa hypothetical protein | |||
| 112520 | 341 aa hypothetical protein | |||
| 112530 | V | V.PspAp32ORFAP (78% identity) | V.CmeDORF112540P | |
| 112540 | M | M.PpuKF703ORFEP (85% identity) | M.CmeDORF112540P | |
| 112550 | Histidine kinase-, DNA gyrase B-, and HSP90-like | |||
| 222900 | 319 aa hypothetical protein | |||
| 222910 | M | M.Pso5ORF11105P (89% identity) | M.CmeDORF222910P | |
| 222920 | Phage integrase family protein | |||
| 207100 | 218 aa hypothetical protein | |||
| 207110 | M | M.Spu10737VI (64% identity) | M.CmeDORF207110P | |
| 244850 | reverse transcriptase | |||
| 244860 | M | M.PalNeoORF16440P (95% identity) | M.CmeDORF244860P | |
| 244870 | 80 aa hypothetical protein | |||
| 275640 | 80 aa hypothetical protein | |||
| 275650 | M | M.CmeDORF269580P (94% identity) | M.CmeDORF275650P | |
| 242280 | hypothetical protein | |||
| ??? | M | hypothetical protein | M.CmeDORF242300P | |
| 242320 | hypothetical protein | |||
| 194700 | Bacteriophage lysis protein | |||
| 194710 | M | M.PspMS646ORF5705P (96% identity) | M.CmeDORF194710P | |
| 194730 | 329 aa hypothetical protein | |||
| 117800 | 679 aa hypothetical protein | |||
| 117810 | M | M.AveVA60ORF26170P (99% identity) | M.CmeDORF117810P | |
| 117820 | V | V.AveVA60ORF26170P (93% identity) | V.CmeDORF117810P | |
| 117830 | 155 aa hypothetical protein | |||
| 145740 | RNA polymerase-associated protein RapA | |||
| 145750 | RM | PspTKPORF28115P (79% identity) | CmeDORF145750P | |
| 174730 | 241 aa hypothetical protein | |||
| 174740 | M | M.Psp602ORF7180P (99% identity) | M.CmeDORF174740P | |
| 174750 | 110 aa hypothetical protein | |||
| 147360 | 55 aa hypothetical protein | |||
| 147370 | M | M.Ari11N1ORF16765P (98% identity) | M.CmeDORF147370P | |
| 147380 | Bacteriophage replication protein O | |||
| 196260 | Pyruvate kinase | |||
| ??? | M | M.BnaBRV3ORF2175P (71% identity) | M.CmeDORFBP | |
| 41920 | 95 aa hypothetical protein | |||
| 41930 | M | M.Pku2ORF18435P (95% identity) | M.CmeDORF41930P | |
| 41940 | DNA polymerase III PolC-type | |||
| 132080 | N-glycosylase/DNA lyase | |||
| 132090 | M | M.Prh2777ORF5001P (82% identity) | M.CmeDORF132090P | |
| 132110 | Deoxyguanosinetriphosphate triphosphohydrolase | |||
| 135850 | Ribulose-phosphate 3-epimerase | |||
| 135860 | M | M.AmeT51DamP (99% identity) | GATC | M.CmeDDamP |
| 135870 | 350 aa hypothetical protein | |||
| 29100 | 116 aa hypothetical protein | |||
| 29110 | M | M.Ahy2111ORF24215P (98% identity) | M.CmeDORF29110P | |
| 29120 | Phage holin family (Lysis protein S) | |||
| 4310 | 71 aa hypothetical protein | |||
| 4320 | M | M.AavAA811ORF23100P (67% identity) | M.CmeDORF4320P | |
| 4330 | DNA adenine methyltransferase YhdJ | |||
| 4320 | Modification methylase HhaI | |||
| 4330 | M | M.Ksp32KORF48730P (55% identity) | M1.CmeDORF4330P | |
| 4340 | M | M.Ksp32KORF48730P (58% identity) | M2.CmeDORF4330P | |
| 4350 | 213 aa hypothetical protein | |||
| 4490 | 66 aa hypothetical protein | |||
| 4500 | M | M.Ahy3206ORF20610P (78% identity) | M.CmeDORF4500P | |
| 4510 | 125 aa hypothetical protein | |||
| 29410 | 76 aa hypothetical protein | |||
| 29420 | M | M.Pli2SM5ORF1002P (48% identity) | M.CmeDORF29420P | |
| 29430 | DNA ligase | |||
| 17300 | 207 aa hypothetical protein | |||
| 17310 | M | M.AmeQST31ORF16995P (83% identity) | M.CmeDORF17310P | |
| 17320 | C-5 cytosine-specific DNA methylase | |||
| 17310 | DNA N-6-adenine-methyltransferase (Dam) | |||
| 17320 | M | M.AhyAe25ORFEP (98% identity) | M.CmeDORF17320P | |
| 17330 | 64 aa hypothetical protein | |||
| 20730 | 96 aa hypothetical protein | |||
| ??? | M | M.Pwa21022ORF15530P (99% identity) | M.CmeDORF20740P | |
| 20760 | 74 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 208860 | M | M.Sse17993ORFCP (64% identity) | M.CmeDORF208860P | |
| 208870 | ATP-dependent DNA helicase UvrD2 | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | PpuR51McrCP (82% identity) | CmeDMcrC4P | |
| 250830 | R | PpuR51McrBP (83% identity) | CmeDMcrB4P | |
| 250840 | 293 aa hypothetical protein | |||
| 204730 | 73 aa hypothetical protein | |||
| 204740 | R | Psp562McrCP (89% identity) | CmeDMcrC3P | |
| 204750 | R | PkeF8McrBP (95% identity) | CmeDMcrB3P | |
| 204760 | 95 aa hypothetical protein | |||
| 273470 | Acyl-coenzyme A:6-aminopenicillanic acid | |||
| 273480 | R | Pma8244McrCP (70% identity) | CmeDMcrC5P | |
| ??? | R | restriction endonuclease | CmeDMcrB5P | |
| 192210 | 155 aa hypothetical protein | |||
| 192220 | R | AmeT58ORF14550P (99% identity) | CmeDORF192220P | |
| 192230 | phosphoserine phosphatase 2 | |||
| 139830 | 237 aa hypothetical protein | |||
| 139840 | R | Rsp0813McrBP (79% identity) | CmeDMcrBP | |
| 139850 | R | BbrKU1201McrCP (82% identity) | CmeDMcrCP | |
| 139860 | 96 aa hypothetical protein | |||
| 160970 | Type I restriction enzyme | |||
| 160980 | R | PpaX49MrrP (95% identity) | CmeDMrrP | |
| 160990 | 501 aa hypothetical protein | |||
| 110480 | 164 aa hypothetical protein | |||
| 110490 | R | AhdMrrP (90% identity) | CmeDMrr2P | |
| 110500 | Type I restriction enzyme EcoKI M protein | |||
| 169980 | 237 aa hypothetical protein | |||
| 169990 | R | Pto511McrBP (98% identity) | CmeDMcrB2P | |
| 170000 | R | Pto511McrCP (97% identity) | CmeDMcrC2P | |
| 170010 | Prophage CP4-57 integrase | |||
| 173510 | Type I restriction enzyme EcoKI M protein | |||
| 173520 | R | Ahy17MrrP (67% identity) | CmeDMrr4P | |
| 173530 | 376 aa hypothetical protein | |||
| 93060 | 140 aa hypothetical protein | |||
| 93070 | R | Asp1406ORF4460P (93% identity) | CmeDORF93070P | |
| 93080 | 566 aa hypothetical protein | |||
| 107430 | 192 aa hypothetical protein | |||
| 107440 | R | PspS49MrrP (96% identity) | CmeDMrr3P | |
| 107450 | 146 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 291300 | M | M.BnaB1ORFBP (97% identity) | M.CmeDORF291300P | |
| 291310 | D-inositol 3-phosphate glycosyltransferase | |||