Escherichia coli NRRL B-1109 |
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Putative Escherichia coli NRRL B-1109 RM systems
Ref: McIntyre,A.B.R. et al. Nat Commun 10 (1), 579 (2019)
REBASE ref # 28626
| Sequence length: | GenBank #: | |
| Chromosome: | 4,773,399 bp | CP039753 |
| plasmid unnamed: | 121,797 bp | CP039754 |
REBASE acronym: Eco1109
Org_num: 34489
All begin FA026_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23330 | IS1 family transposase | |||
| 23335 | R | EcoB1109aORFAP (100% identity) | AAGANNNNNCTC | Eco1109IP |
| 23340 | S | S.EcoB1109aORFAP (100% identity) | AAGANNNNNCTC | S.Eco1109I |
| 23345 | M | M.EcoB1109aORFAP (100% identity) | AAGANNNNNCTC | M.Eco1109I |
| 23350 | IS3 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3280 | epoxyqueuosine reductase QueH | |||
| 3285 | M | M.EcoZ910ORF13770P (100% identity) | GCCGGC | M.Eco1109II |
| 3290 | R | EcoZ910ORF13770P (100% identity) | GCCGGC | Eco1109IIP |
| 3295 | 92 aa hypothetical protein | |||
| 3385 | phosphohydrolase | |||
| 3390 | M | M.EcoB1109aDcmP (100% identity) | CCWGG | M.Eco1109Dcm |
| 3395 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco1109DcmP |
| 3400 | drug/metabolite exporter YedA | |||
| 5425 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco1109ORFBP | |
| 5435 | 59 aa hypothetical protein | |||
| 6495 | 609 aa hypothetical protein | |||
| 6500 | M | M.Sen58011ORF9805P (100% identity) | M.Eco1109ORF6500P | |
| 6505 | DUF977 family protein | |||
| 7155 | DUF3927 domain-containing protein | |||
| 7170 | M | M.SsoCS14ORF10750P (100% identity) | A | M.Eco1109ORF7170P |
| 7175 | TrmB family transcriptional regulator | |||
| 19525 | cell division protein DamX | |||
| 19530 | M | M.UbaC1152DamP (100% identity) | M.Eco1109DamP | |
| 19535 | ribulose-phosphate 3-epimerase | |||
| 20160 | DUF2556 domain-containing protein | |||
| 20165 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco1109ORF20165P |
| 20170 | DNA-binding transcriptional regulator Fis | |||
| plasmid unnamed | ||||
| 24035 | 269 aa hypothetical protein | |||
| 24040 | M | M.EcoB1109aORFFP (100% identity) | M.Eco1109ORF24040P | |
| 24045 | 76 aa hypothetical protein | |||