Escherichia coli PigCaeca_2 |
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Putative Escherichia coli PigCaeca_2 RM systems
Ref: unpublished
REBASE ref # 28556
| Sequence length: | GenBank #: | |
| Chromosome: | 4,835,919 bp | CP038857 |
| plasmid unnamed: | 131,158 bp | CP038858 |
REBASE acronym: EcoPC2
Org_num: 34312
All begin E5285_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11315 | M48 family peptidase | |||
| 11320 | R | Sen59ORF24615P (100% identity) | GATGNNNNNCTG | EcoPC2ORF11330P |
| 11325 | S | S.Sen59ORF24615P (100% identity) | GATGNNNNNCTG | S.EcoPC2ORF11330P |
| 11330 | M | M.Sen59ORF24615P (100% identity) | GATGNNNNNCTG | M.EcoPC2ORF11330P |
| 11335 | helicase subunit | |||
| 19850 | IS3-like element IS3 family transposase | |||
| 19855 | S | S.EcoYPE10ORF21230P (58% identity) | S.EcoPC2ORF19845P | |
| 19860 | endoribonuclease SymE | |||
| 20070 | IS3-like element IS2 family transposase | |||
| 20075 | M | M.SsoSE61ORF6540P (12% identity) | M.EcoPC2ORF20075AP | |
| 20080 | IS3-like element IS3 family transposase | |||
| 20085 | M | M.EcoYPE3ORF20380P (93% identity) | M.EcoPC2ORF20075BP | |
| 20090 | S | S.Eco1409ORF14270P (100% identity) | S.EcoPC2ORF20075P | |
| 20095 | R | EcoYPE3ORF20380P (100% identity) | EcoPC2ORF20075P | |
| 20100 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1730 | cell division protein DamX | |||
| 1735 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoPC2DamP |
| 1740 | ribulose-phosphate 3-epimerase | |||
| 2360 | DUF2556 domain-containing protein | |||
| 2365 | M | M.SspS13ORF21055P (99% identity) | ATGCAT | M.EcoPC2ORF2365P |
| 2370 | DNA-binding transcriptional regulator Fis | |||
| 8940 | phosphohydrolase | |||
| 8945 | M | M.EcosPA11DcmP (100% identity) | CCWGG | M.EcoPC2DcmP |
| 8950 | V | V.Ecostr9DcmP (74% identity) | V.EcoPC2DcmP | |
| 8955 | drug/metabolite exporter YedA | |||
| 15160 | replication endonuclease | |||
| 15165 | M | M.SflLIN17ORF14475P (100% identity) | GATC | M.EcoPC2ORF15165P |
| 15170 | TraR/DksA family transcriptional regulator | |||
| 21555 | LexA family transcriptional regulator | |||
| 21560 | M | M.EcoZ1836ORF22690P (99% identity) | GATC | M.EcoPC2ORF21560P |
| 21565 | PerC family transcriptional regulator | |||
| plasmid unnamed | ||||
| 24005 | 59 aa hypothetical protein | |||
| 24010 | M | M.Ecos69ORF26765P (100% identity) | M.EcoPC2ORF24010P | |
| 24015 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20195 | S8 family peptidase | |||
| 20200 | M | M.EcoE35ORF19955P (100% identity) | M.EcoPC2ORF20200P | |
| 20205 | R | EcoE35ORF19955P (100% identity) | EcoPC2ORF20200P | |
| 20210 | 97 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20050 | HNH endonuclease | |||
| 20055 | R | EcoYPE3McrCP (100% identity) | EcoPC2McrCP | |
| 20060 | R | EcoYPE3McrBP (100% identity) | EcoPC2McrBP | |
| 20065 | DUF4942 domain-containing protein | |||