Escherichia coli PF9285 |
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Putative Escherichia coli PF9285 RM systems
Ref: Wuthrich,D. et al. unpublished
REBASE ref # 28573
| Sequence length: | GenBank #: | |
| Chromosome: | 5,215,562 bp | CP038791 |
| plasmid pDW54_1: | 129,920 bp | CP038792 |
| plasmid pDW54_2: | 87,604 bp | CP038793 |
REBASE acronym: Eco9285
Org_num: 34310
All begin E5M00_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21850 | restriction endonuclease | |||
| 21855 | R | Ssp28760ORF3465P (99% identity) | TGANNNNNNNNTGCT | Eco9285ORF21860P |
| 21860 | M | M.Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | M.Eco9285ORF21860P |
| 21865 | S | S.EcosBORF22035P (100% identity) | TGANNNNNNNNTGCT | S.Eco9285ORF21860P |
| 21870 | endoribonuclease SymE | |||
| 22905 | lactate utilization protein C | |||
| 22910 | R | EcoW087ORF4400P (99% identity) | Eco9285ORF22920P | |
| 22915 | S | S.EcoEC107ORF17490P (100% identity) | S.Eco9285ORF22920P | |
| 22920 | M | M.SflFF80ORF4075P (100% identity) | M.Eco9285ORF22920P | |
| 22925 | DNA-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2235 | cell division protein DamX | |||
| 2240 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco9285DamP |
| 2245 | ribulose-phosphate 3-epimerase | |||
| 2865 | DUF2556 domain-containing protein | |||
| 2870 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco9285ORF2870P |
| 2875 | DNA-binding transcriptional regulator Fis | |||
| 7500 | DUF1382 family protein | |||
| 7505 | M | M.EcoCUVM3ORF9145P (100% identity) | M.Eco9285ORF7505P | |
| 7510 | PerC family transcriptional regulator | |||
| 18555 | drug/metabolite exporter YedA | |||
| 18560 | V | V.SsoSE61DcmP (100% identity) | V.Eco9285DcmP | |
| 18565 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco9285DcmP |
| 18570 | phosphohydrolase | |||
| plasmid pDW54_1 | ||||
| 26610 | 73 aa hypothetical protein | |||
| 26615 | M | M.SflN92ORF24820P (100% identity) | M.Eco9285ORF26615P | |
| 26620 | 101 aa hypothetical protein | |||
| plasmid pDW54_2 | ||||
| 26880 | 101 aa hypothetical protein | |||
| 26885 | M | M.EcoSCU204ORF26105P (100% identity) | M.Eco9285ORF26885P | |
| 26890 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14005 | site-specific DNA recombinase | |||
| 14010 | R | SsoSE61ORF22640P (98% identity) | YCGR | Eco9285McrAP |
| 14015 | isocitrate dehydrogenase | |||
| 21845 | GTPase | |||
| 21850 | R | Ssp28760MrrP (100% identity) | Eco9285MrrP | |
| 21855 | type I restriction-modification system | |||
| 21870 | endoribonuclease SymE | |||
| 21875 | R | Ssp28760McrBP (100% identity) | Eco9285McrBP | |
| 21880 | R | 5-methylcytosine-specific restriction | Eco9285McrCP | |
| 21885 | IS1-like element IS1A family transposase | |||