Parashewanella spongiae HJ039 |
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Putative Parashewanella spongiae HJ039 RM systems
Ref: Kwon,K.K. et al. unpublished
REBASE ref # 28472
Complete sequence: 5,468,749 bp
GenBank #: CP037952
REBASE acronym: PspHJ039
Org_num: 34013
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.Esp4GORFDP (80% identity) | GAGNNNNNNNTTGC | M.PspHJ039II |
| ??? | S | S.Ple082ORFBP (50% identity) | GAGNNNNNNNTTGC | S.PspHJ039II |
| ??? | R | EmoCL33ORF4516P (82% identity) | GAGNNNNNNNTTGC | PspHJ039IIP |
| ??? | R | PspHJ039IIIP (95% identity) | TACNNNNNNTGAG | PspHJ039IVP |
| ??? | S | S.Pag14585ORF971P (53% identity) | TACNNNNNNTGAG | S.PspHJ039IV |
| ??? | M | M.PspHJ039III (91% identity) | TACNNNNNNTGAG | M.PspHJ039IV |
| ??? | R | PspHJ039IVP (95% identity) | GNGANNNNNNNTATC | PspHJ039IIIP |
| ??? | S | S.Ppa46540ORF17170P (44% identity) | GNGANNNNNNNTATC | S.PspHJ039III |
| ??? | M | M.PspHJ039IV (91% identity) | GNGANNNNNNNTATC | M.PspHJ039III |
| ??? | M | SAM-dependent DNA methyltransferase | M.PspHJ039ORFEAP | |
| ??? | M | DNA methyltransferase, partial | M.PspHJ039ORFEBP | |
| ??? | S | S.GspMT6ORF14225P (21% identity) | S.PspHJ039ORFEP | |
| ??? | R | AspLTRORFDP (89% identity) | PspHJ039ORFEP | |
| ??? | AAA family ATPase | |||
| ??? | S | S3.Pmi4ORF14265P (75% identity) | S.PspHJ039ORFFP | |
| ??? | R | type I restriction endonuclease subunit R | PspHJ039ORFFBP | |
| ??? | R | Vqu7734ORFFP (57% identity) | PspHJ039ORFFAP | |
| ??? | 459 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.VmaG62DndAP (69% identity) | M.PspHJ039DndAP | |
| ??? | DNA sulfur modification protein DndB | |||
| ??? | cysteine desulfurase DndA | |||
| ??? | M | M.AdhBC18DndBP (52% identity) | M.PspHJ039DndBP | |
| ??? | DNA phosphorothioation system sulfurtransferase DndC | |||
| ??? | DNA sulfur modification protein DndB | |||
| ??? | M | M.VchW7GDndCP (69% identity) | M.PspHJ039DndCP | |
| ??? | DNA sulfur modification protein DndD | |||
| ??? | DNA phosphorothioation system sulfurtransferase DndC | |||
| ??? | M | M.VgaPB1DndDP (60% identity) | M.PspHJ039DndDP | |
| ??? | DNA sulfur modification protein DndE | |||
| ??? | DNA sulfur modification protein DndD | |||
| ??? | M | M.VchVN152DndEP (77% identity) | M.PspHJ039DndEP | |
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| ??? | DNA sulfur modification protein DndE | |||
| ??? | R | Vez21522DptHP (69% identity) | PspHJ039DptHP | |
| ??? | DNA phosphorothioation-dependent restriction protein DptG | |||
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| ??? | R | Awo160DptGP (65% identity) | PspHJ039DptGP | |
| ??? | DNA phosphorothioation-dependent restriction protein DptF | |||
| ??? | DNA phosphorothioation-dependent restriction protein DptG | |||
| ??? | R | Awo160DptFP (57% identity) | PspHJ039DptFP | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | SspAGA9McrCP (56% identity) | PspHJ039McrCP | |
| ??? | R | SdeS12McrBP (42% identity) | PspHJ039McrBP | |
| ??? | type I restriction endonuclease subunit R | |||
| ??? | R | Tse42588McrBP (64% identity) | PspHJ039McrB2P | |
| ??? | R | Tse42588McrCP (59% identity) | PspHJ039McrC2P | |
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | Dam family site-specific DNA--methyltransferase | GATC | M.PspHJ039I |