Salmonella enterica subsp. enterica serovar 4,[5],12:i:- L-3838 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar 4,[5],12:i:- L-3838 RM systems
Ref: Sekizuka,T. et al. unpublished
REBASE ref # 28597
Complete sequence: 4,998,869 bp
GenBank #: AP019374
REBASE acronym: Sen3838
Org_num: 34365
All begin STL3838_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 39850 | restriction endonuclease | |||
| 39860 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen3838ORF39870P |
| 39870 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen3838ORF39870P |
| 39880 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen3838ORF39870P |
| 39890 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3540 | cell division protein DamX | |||
| 3550 | M | M.StyTDamP (100% identity) | GATC | M.Sen3838DamP |
| 3560 | ribulose-phosphate 3-epimerase | |||
| 4460 | DUF2556 domain-containing protein | |||
| 4470 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen3838ORF4470P |
| 4480 | Fis family transcriptional regulator | |||
| 6320 | DUF2732 domain phage protein | |||
| 6330 | M | M.SensSZL38ORF19965P (100% identity) | M.Sen3838ORF6330P | |
| 6340 | phage replication protein A | |||
| 12150 | endonuclease | |||
| 12160 | M | M.Ssp17155ORFGP (100% identity) | M.Sen3838ORF12160P | |
| 12170 | IS6 family transposase | |||
| 13050 | Ead/Ea22-like protein | |||
| 13060 | M | M.StyTORF1914P (100% identity) | M.Sen3838ORF13060P | |
| 13070 | uncharacterized protein | |||
| 19370 | phage protein | |||
| 19380 | M | M.Ssp17155ORFIP (100% identity) | M.Sen3838ORF19380P | |
| 19390 | RusA family endonuclease protein | |||
| 19840 | phosphohydrolase | |||
| 19850 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen3838DcmP |
| 19860 | V | V.StyUK1DcmP (100% identity) | V.Sen3838DcmP | |
| 19870 | inner membrane transporter YedA | |||
| 40180 | DNA repair protein | |||
| 40190 | RM | StyUK1IV (100% identity) | GATCAG | Sen3838ORF40190P |
| 40200 | AAA domain protein | |||
| 43060 | LexA family transcriptional regulator | |||
| 43070 | M | M.SflLIN17ORF20615P (100% identity) | GATC | M.Sen3838ORF43070P |
| 43080 | phage protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35420 | 33 aa hypothetical protein | |||
| 35430 | R | StyUK1IP (99% identity) | CAGAG | Sen3838ORF35440P |
| 35440 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen3838ORF35440P |
| 35450 | sialic acid transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 39840 | toxin ShpA of toxin-antitoxin (TA) system | |||
| 39850 | R | StyUK1MrrP (100% identity) | Sen3838MrrP | |
| 39860 | type I restriction-modification system | |||