Citrobacter species LY-1 |
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Putative Citrobacter species LY-1 RM systems
Ref: Wang,H. et al. unpublished
REBASE ref # 28525
| Sequence length: | GenBank #: | |
| Chromosome: | 5,211,009 bp | CP037864 |
| plasmid unnamed2: | 143,364 bp | CP037863 |
REBASE acronym: CspLY1
Org_num: 34110
All begin E1B03_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4210 | endoribonuclease SymE | |||
| 4215 | S | S.Cfr12C12ORF20430P (65% identity) | S.CspLY1ORF4220P | |
| 4220 | M | M.Cfr200ORF20755P (99% identity) | M.CspLY1ORF4220P | |
| 4225 | R | Rel413ORF3220P (98% identity) | CspLY1ORF4220P | |
| 4230 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4000 | integrase | |||
| 4005 | M | M.Cyo13708ORF931P (97% identity) | M.CspLY1ORF4005P | |
| 4010 | R | R1.Cyo13708ORF931P (97% identity) | R1.CspLY1ORF4005P | |
| 4015 | R | R2.Cyo13708ORF931P (98% identity) | R2.CspLY1ORF4005P | |
| 4020 | 307 aa hypothetical protein | |||
| 7505 | TraR/DksA family transcriptional regulator | |||
| 7510 | M | M.CspLY1ORF15620P (98% identity) | M.CspLY1ORF7510P | |
| 7515 | 94 aa hypothetical protein | |||
| 15615 | 94 aa hypothetical protein | |||
| 15620 | M | M.CspLY1ORF7510P (98% identity) | M.CspLY1ORF15620P | |
| 15625 | TraR/DksA family transcriptional regulator | |||
| 16520 | drug/metabolite exporter YedA | |||
| 16525 | V | V.Csp696ORF10355P (97% identity) | V.CspLY1ORF16530P | |
| 16530 | M | M.CfrBDORF19425P (97% identity) | CCWGG | M.CspLY1ORF16530P |
| 16535 | phosphohydrolase | |||
| 23855 | DNA-binding transcriptional regulator Fis | |||
| 23860 | M | M.CspMGH103ORFEP (96% identity) | ATGCAT | M.CspLY1ORF23860P |
| 23865 | DUF2556 domain-containing protein | |||
| 24410 | ribulose-phosphate 3-epimerase | |||
| 24415 | M | M.CfrC361DamP (100% identity) | GATC | M.CspLY1DamP |
| 24420 | cell division protein DamX | |||
| plasmid unnamed2 | ||||
| 140 | 73 aa hypothetical protein | |||
| 145 | M | M.CspLY1ORF910P (100% identity) | M.CspLY1ORF145P | |
| 150 | 115 aa hypothetical protein | |||
| 905 | 73 aa hypothetical protein | |||
| 910 | M | M.CspLY1ORF145P (100% identity) | M.CspLY1ORF910P | |
| 915 | 115 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4225 | type I restriction-modification system | |||
| 4230 | R | Cfr200MrrP (99% identity) | CspLY1MrrP | |
| 4235 | GTPase | |||