Prevotella intermedia KCOM 2833 |
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Putative Prevotella intermedia KCOM 2833 RM systems
Ref: Kook,J.-K. et al. unpublished
REBASE ref # 24621
GenBank #: PENH00000000
REBASE acronym: Pin2833
Org_num: 33999
All begin CTM59_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 10525 | type I restriction endonuclease | |||
| 10530 | S | S3.Pin2833ORF7120P (100% identity) | S3.Pin2833ORF10550P | |
| 10535 | integrase | |||
| 10540 | S | S2.Pin1101ORFHP (100% identity) | S2.Pin2833ORF10550P | |
| 10545 | 386 aa hypothetical protein | |||
| 10550 | M | M.Pni630II (100% identity) | M.Pin2833ORF10550P | |
| 10555 | R | Pni630IIP (100% identity) | Pin2833ORF10550P | |
| 10560 | DUF262 domain-containing protein | |||
| 10565 | C | C.Pin2833ORF7120P (100% identity) | C.Pin2833ORF10550P | |
| 10570 | site-specific integrase | |||
| 9845 | XRE family transcriptional regulator | |||
| 9850 | M | M.Pin2033ORF4630P (99% identity) | M.Pin2833ORF9850P | |
| 9855 | S | S2.Pin2033ORF4630P (100% identity) | S1.Pin2833ORF9850P | |
| 9860 | S | S1.Pin2033ORF4630P (99% identity) | S2.Pin2833ORF9850P | |
| 9865 | R | Pin2033ORF4630P (99% identity) | Pin2833ORF9850P | |
| 9870 | fibronectin-binding protein (FBP) | |||
| 5905 | XRE family transcriptional regulator | |||
| 5910 | R | Pgi1oldORF6055P (99% identity) | Pin2833ORF5915P | |
| 5915 | M | M.Pgi1oldORF6055P (99% identity) | M.Pin2833ORF5915P | |
| 5920 | S | S1.Pgi1oldORF6055P (100% identity) | S1.Pin2833ORF5915P | |
| 5925 | 261 aa hypothetical protein | |||
| 5930 | S | S2.Pgi1oldORF6055P (95% identity) | S2.Pin2833ORF5915P | |
| 5935 | S | S.Psp1349ORF335P (61% identity) | S3.Pin2833ORF5915P | |
| 5940 | integrase | |||
| 5945 | S | S3.Pgi1oldORF6055P (56% identity) | S4.Pin2833ORF5915P | |
| 5950 | 139 aa hypothetical protein | |||
| 7090 | 76 aa hypothetical protein | |||
| 7095 | S | S4.Pni630IIP (100% identity) | S4.Pin2833ORF7120P | |
| 7100 | integrase | |||
| 7105 | S | S3.Pin2833ORF10550P (100% identity) | S3.Pin2833ORF7120P | |
| 7110 | S | S4.Pin1101ORFHP (86% identity) | CYAANNNNNNNRTC | S2.Pin2833ORF7120P |
| 7115 | 386 aa hypothetical protein | |||
| 7120 | M | M.Pni630II (100% identity) | M.Pin2833ORF7120P | |
| 7125 | R | Pni630IIP (100% identity) | Pin2833ORF7120P | |
| 7130 | DUF262 domain-containing protein | |||
| 7135 | C | C.Pin2833ORF10550P (100% identity) | C.Pin2833ORF7120P | |
| 7140 | site-specific integrase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9390 | XRE family transcriptional regulator | |||
| 9395 | M | M1.Pco7716ORF1921P (98% identity) | M1.Pin2833ORF9395P | |
| 9400 | R | Pme0054ORF8110P (99% identity) | Pin2833ORF9395P | |
| 9405 | M | M1.Pin2838ORF11420P (99% identity) | M2.Pin2833ORF9395P | |
| 9410 | topoisomerase I | |||
| 9520 | thymidylate synthase | |||
| 9525 | M | M.Pin2838ORF60P (96% identity) | M.Pin2833ORF9525P | |
| 9530 | 80 aa hypothetical protein | |||
| 3275 | 293 aa hypothetical protein | |||
| 3280 | R | Pin2033IP (99% identity) | GATC | Pin2833IP |
| 3285 | M | M.Pin1779I (99% identity) | GATC | M.Pin2833I |
| 3290 | 4-hydroxy-3-methylbut-2-enyl diphosphate | |||
| 6195 | RNA methyltransferase | |||
| 6200 | M | M.Pin2837ORF5790P (100% identity) | M.Pin2833ORF6200P | |
| 6205 | 73 aa hypothetical protein | |||
| 6210 | R | Pin2837ORF5790P (100% identity) | Pin2833ORF6200P | |
| 6215 | nicotinate phosphoribosyltransferase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10025 | 65 aa hypothetical protein | |||
| 10030 | R | Pin1653McrBP (95% identity) | Pin2833McrBP | |
| 10035 | R | Pin2838McrCP (99% identity) | Pin2833McrCP | |
| 10040 | 64 aa hypothetical protein | |||